Sequence
atgc intronic sequence ATGC exonic sequencegtaggcgagcttgccgcaagcatcgcattgctctctcttttatttcggggatcgccctttttgtagagttcgattgatcttttgccttccagGTCTATCCCGAAGGAACGCATTTGATGGTGCCGTGGTTTGACAGGCCAGTGATCTACGATGTCCGTGCTAGACCCAACTTGGTCGAGAGTACTTCCGGCA
Basic information
species | Selaginella moellendorffii |
transcript | EFJ07463 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ07463 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA12G33520.1 (Glycine max), 3'ss of exon 2
--------gtaggcgagcttgccgcaagcatcgcat-tgctctctcttttatttcggggatcgccctttttgtagagttcgattgatcttttgccttccagGTCTATCCCGAAGGAACGCATTTGATGGTGCCGTGGTTTGACAGGCCAGTGATCTACGATGTCCGTGCTAGACCCAACTTGGTCGAGAGTACTTCCGGCA
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ccttctaaattgattcgttattactaataagtgtgtgtgaccattgtttgagttctgttatggtggttgtagtaaaatt-gatatgttggttaatgtgcagGTCTATCCTGAAGGAACACACTTTATGATTCCGTGGTTTGAGAGGCCTGTTATCTATGATGTCCGTGCACGACCCCATCTAGTTGAGAGTACATCTGGTA
upper sequence: EFJ07463 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA09G30410.1 (Glycine max), 3'ss of exon 3
-------gtaggcgagct--tgccgcaagcatcgcattgctctctcttttatttcggggatcgccctttttgtagagttcgattgatcttttgccttccagGTCTATCCCGAAGGAACGCATTTGATGGTGCCGTGGTTTGACAGGCCAGTGATCTACGATGTCCGTGCTAGACCCAACTTGGTCGAGAGTACTTCCGGCA
|| || | | | | || || | | ||| | ||| | | | | ||| | || ||| | || | | ||||||||||| |||||||| || || || | ||||||||||| ||||| || ||||| ||||||||||| ||||| | | || |||||||| || || |
taccttctcagttgatttgttatcacttacaagtgtctggccattgtttaagttctgttctggtgttgggagtaaaatt-gatatgttggttaacgtgcagGTCTATCCTGAAGGAACTCACTTCATAATTCCGTGGTTTGAGAGGCCGGTTATCTATGATGTCCGTGCACGACCCCATCTAGTTGAGAGTACATCTGGGA
upper sequence: EFJ07463 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S14_33V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------------------------------gtaggcgagcttgccgc-aagcatcgcattgctctctct---tttatttcggggatcgccctttttgtagagttcgattgatcttttgccttccagGTCTATCCCGAAGGAACGCATTTGATGGTGCCGTGGTTTGACAGGCCAGTGATCTACGATGTCCGTGCTAGACCCAACTTGGTCGAGAGTACTTCCGGCA
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gtgcgggagggtgaattgaagtgggttagttgttttgttctttcaattggattgattgttaagtttggttttgtaaggtttgggttgagtccggttggggtttttataatcgtgccgggtttcggtgatcggttgcagGTGTATCCTGAGGGAACGCATTTTATGATTCCCTGGTTTGACAGACCTGTGATATACGATGTCCGTGCACGACCCAACATTGTCGAAAGCACATCAGGAA
upper sequence: EFJ07463 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S41_59V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaggcgagcttgcc-gcaagcatcgcattgctctct----------------cttttatttcggggatcgccctttttgtagagttcgattgatctt-----ttgccttccagGTCTATCCCGAAGGAACGCATTTGATGGTGCCGTGGTTTGACAGGCCAGTGATCTACGATGTCCGTGCTAGACCCAACTTGGTCGAGAGTACTTCCGGCA
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gtgagtgagtgagtgagtgtgaattgcattggtctttgatgagacggaatttggatttgttttagggtttgga--ttttgacgatcgtggcggatttcgaggatggccttgcagGTGTATCCAGAGGGAACGCATTTTATGATTCCCTGGTTCGACAGGCCTGTGATATATGATGTCCGTGCACGACCTAACATTGTCGAGAGCACGTCGGGGA
upper sequence: EFJ07463 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S215_63V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------------------------------------------gtaggcgagcttgccgcaagcatcgcattgctctctcttttatttcggggatcgccctttttgtagag---ttcgattgatcttt-------tgccttccagGTCTATCCCGAAGGAACGCATTTGATGGTGCCGTGGTTTGACAGGCCAGTGATCTACGATGTCCGTGCTAGACCCAACTTGGTCGAGAGTACTTCCGGCA
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gtacagtggtcgaaatcggtgctttttttttttttttttttttttttgttttttttcgcttggtttcagtctaggtccagtttgaatttttgctggctaggaatttgggtgtgtctggacggggttttgatggctgttaggaatggtggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTCATCTACGATGTCCGAGCACGACCTAATATCGTTGAGAGCACCTCAGGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|169065155|gb|FE473979.1|FE473979EST: CCGGGCATCGCGCCATCGTCTTCAATCGCCTCGTCGGGGTCAAGGACAAG GTCTATCCCGAAGGAACGCATTTGATGGTGCCGTGGTTTGACAGGCCAGTG
genomic: CCGGGCATCGCGCCATCGTCTTCAATCGCCTCGTCGGGGTCAAGGACAAGgtaggcgagc ... tgccttccagGTCTATCCCGAAGGAACGCATTTGATGGTGCCGTGGTTTGACAGGCCAGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttatttcggggatcgccctttttgtagagttcgattgatcttttgccttccagGTCTATCCCGAAGGAACGCATTTGATGGTGCCGTGGTTTGACAGGCCAGTGATCTACGATGTCCGTGCTAGACCCAACTTGGTCGAGAGTACTTCCGGCA
gattgat putative branch site (score: 4)
tcttttgccttcc CT-rich tract
tttttgta TA-rich tract