1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatggccaattcttctcttccctaaggaattttcctggtttggatcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAAGGCCAGACCATGGACAATATCAGCGCGGAGCTCCTGGAGGACTGCGCT
species | Selaginella moellendorffii |
transcript | EFJ06382 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCACGAGAACGAGGACCTCATCAAGTACGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAEST: gi|169075487|gb|FE482497.1|FE482497
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
EST: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAEST: gi|169111590|gb|FE513960.1|FE513960
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
EST: AAGCACGAGAACGAGGACCTCATCAAGTACGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAEST: gi|169111589|gb|FE513959.1|FE513959
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
EST: GAACGAGGGCCTCATCAAGTACGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAEST: gi|169033678|gb|FE441918.1|FE441918
genomic: GAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
EST: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAEST: gi|169110034|gb|FE513327.1|FE513327
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
EST: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAEST: gi|169064722|gb|FE476081.1|FE476081
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
EST: AAGCACGAGAACGAGGACCTCATCAAGTACGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAEST: gi|169035459|gb|FE444397.1|FE444397
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
EST: AAGCACGAGAACGAGGACCTCATCAAGTACGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAEST: gi|169033679|gb|FE441919.1|FE441919
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
EST: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAEST: gi|169069410|gb|FE479493.1|FE479493
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
EST: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAEST: gi|169064721|gb|FE476080.1|FE476080
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
EST: AAGCACGAGAACGAGGACCTCATCAAGTACGGTTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAEST: gi|169110033|gb|FE513326.1|FE513326
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
EST: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAEST: gi|169035458|gb|FE444396.1|FE444396
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
EST: AAGCACGAGAACGAGGACCTCATCAAGTACGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTAC-TGNAGGCTCCACAEST: gi|169069411|gb|FE479494.1|FE479494
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTG-AGGCTCCACA
EST: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAEST: gi|169075488|gb|FE482498.1|FE482498
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
EST: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTG GTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
genomic: AAGCACGAGAACGAGGACCTCATCAAGTATGGCTTCCCCGAGGATATCTGgtatggccaa ... atcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAA
gtatggccaattcttctcttccctaaggaattttcctggtttggatcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAAGGCCAGACCATGGACAATATCAGCGCGGAGCTCCTGGAGGACTGCGCT
tcttccc CT-rich tract
aatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggccaattcttctcttccctaaggaattttcctggtttggatcttcccagGTTTCACGTTGACAAGCTCTCCTCGGCTCATGTCTACTTGAGGCTCCACAAAGGCCAGACCATGGACAATATCAGCGCGGAGCTCCTGGAGGACTGCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA