1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgatcttacactccatctagagctagcaaaaagttttggttccatcctcgcttgttctctttgcttgcatgccgtgtttttctgtgctcgtgtgtgatctttggctctaatgacctttggttttctcgatatcagGTGCGAGATCTTGCCAATAAGACTGGCGTGGATTTTAGCGGCCAAATCGAAGAGCTCGAGCAAAAATACCACCAG
species | Selaginella moellendorffii |
transcript | EFJ05885 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTCCCGTTCGAGAAACCTATCATCGATCTCGAAGCTAGAATCGAAGAG GTGCGAGATCTTGCCAATAAGACTGGCGTGGATTTTAGCGGCCAAATCGAAEST: gi|169102977|gb|FE504731.1|FE504731
genomic: CGCTCCCGTTCGAGAAACCTATCATCGATCTCGAAGCTAGAATCGAAGAGgtatgatctt ... tcgatatcagGTGCGAGATCTTGCCAATAAGACTGGCGTGGATTTTAGCGGCCAAATCGAA
EST: CGCTCCCGTTCGAGAAACCTATCATCGATCTCGAAGCTAGAATCGAAGAG GTGCGAGATCTTGCCAATAAGACTGGCGTGGATTTTAGCGGCCAAATCGAAEST: gi|169067724|gb|FE474244.1|FE474244
genomic: CGCTCCCGTTCGAGAAACCTATCATCGATCTCGAAGCTAGAATCGAAGAGgtatgatctt ... tcgatatcagGTGCGAGATCTTGCCAATAAGACTGGCGTGGATTTTAGCGGCCAAATCGAA
EST: CGCTCCCGTTCGAGAAACCTATCATCGATCTCGAAGCTAGAATCGAAGAG GTGCGAGATCTTGCCAATAAGACTGGCGTGGATTTTAGCGGCCAAATCGAA
genomic: CGCTCCCGTTCGAGAAACCTATCATCGATCTCGAAGCTAGAATCGAAGAGgtatgatctt ... tcgatatcagGTGCGAGATCTTGCCAATAAGACTGGCGTGGATTTTAGCGGCCAAATCGAA
tctgtgctcgtgtgtgatctttggctctaatgacctttggttttctcgatatcagGTGCGAGATCTTGCCAATAAGACTGGCGTGGATTTTAGCGGCCAAATCGAAGAGCTCGAGCAAAAATACCACCAG
ctctaat putative branch site (score: 29)
cctttggttttctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatcttacactccatctagagctagcaaaaagttttggttccatcctcgcttgttctctttgcttgcatgccgtgtttttctgtgctcgtgtgtgatctttggctctaatgacctttggttttctcgatatcagGTGCGAGATCTTGCCAATAAGACTGGCGTGGATTTTAGCGGCCAAATCGAAGAGCTCGAGCAAAAATACCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT