1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtaacaccatagttttctcgcgagcgctgattcgatttccctggttttccagCTATAACAGGATCTGTGGAATGGTTTCCAAGCTCACCAGCATTCTCAAGAAGCTCGATCCCAAAGATCCATTCCGGATACAAATGACCGATCAGCTGCTA
species | Selaginella moellendorffii |
transcript | EFJ04963 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCCAGGTGATGCAGCGCTACCGAGTCACCGGCCGCGACGATTACAAGCA CTATAACAGGATCTGTGGAATGGTTTCCAAGCTCACCAGCATTCTCAAGAAEST: gi|169115669|gb|FE517879.1|FE517879
genomic: GTCCAGGTGATGCAGCGCTACCGAGTCACCGGCCGCGACGATTACAAGCAgtgagtaaca ... ggttttccagCTATAACAGGATCTGTGGAATGGTTTCCAAGCTCACCAGCATTCTCAAGAA
EST: GTCCAGGTGATGCAGCGCTACCGAGTCACCGGCCGCGACGATTACAAGCA CTATAACAGGATCTGTGGAATGGTTTCCAAGCTCACCAGCATTCTCAAGAA
genomic: GTCCAGGTGATGCAGCGCTACCGAGTCACCGGCCGCGACGATTACAAGCAgtgagtaaca ... ggttttccagCTATAACAGGATCTGTGGAATGGTTTCCAAGCTCACCAGCATTCTCAAGAA
tgagtaacaccatagttttctcgcgagcgctgattcgatttccctggttttccagCTATAACAGGATCTGTGGAATGGTTTCCAAGCTCACCAGCATTCTCAAGAAGCTCGATCCCAAAGATCCATTCCGGATACAAATGACCGATCAGCTGCTA
tttccctggttttcc CT-rich tract
atagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaacaccatagttttctcgcgagcgctgattcgatttccctggttttccagCTATAACAGGATCTGTGGAATGGTTTCCAAGCTCACCAGCATTCTCAAGAAGCTCGATCCCAAAGATCCATTCCGGATACAAATGACCGATCAGCTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT