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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtaagtctggattgctttctgggacatgaaactctgaccaaagaacttatccatccttctctcttcctccacagGTTATACTCGAAGTACCCATGGAGATACTTGTCACCGTGAGCAGCAATCTCCCTTGGATGTTCTTCCCGGATATTGTACCAATCGGTCACCCAGTGTTTG

Basic information

species Selaginella moellendorffii
transcript EFJ04899
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ04899 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT4G20130.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgggtaagtctggattgctttctgg-gacatgaaactctgaccaaagaacttatccatccttctctctt---cctccacagGTTATACTCGAAGTACCCATGGAGATACTTGTCACCGTGAGCAGCAATCTCCCTTGGATGTTCTTCCCGGATATTGTACCAATCGGTCACCCAGTGTTTG
||  ||     | | |       ||   || |     | ||  |       |     ||  |  | ||||    |||  ||||| ||  | ||  | ||  | ||  |  |  | ||| | ||    || | |||||||||||| ||||| |||||||||||||| ||||| ||  | || |
gtcagtcttcttagttaaaaagttgacaactttttgttttgttcttctctttagattattttgttttcttttctctctgcagGTGATTATGGAGATTCCTCTTGAACTGATGATAACCATTAGACAGAAGCACCCTTGGATGTTTTTCCCTGATATTGTACCAATTGGTCATCCTATTTTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggacatgaaactctgaccaaagaacttatccatccttctctcttcctccacagGTTATACTCGAAGTACCCATGGAGATACTTGTCACCGTGAGCAGCAATCTCCCTTGGATGTTCTTCCCGGATATTGTACCAATCGGTCACCCAGTGTTTG
            ctctgac  putative branch site (score: 3)
                          cttatccatccttctc  putative PPT
                        aacttat  TA-rich tract