1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgctggtatagtagcataaaatttttttttatgatgctaatcaaaatctctctcttttgcacttctttttaggtgaaatttattcttttttctgacacagAAGAGCGTGCATTTCCATTCAGAAGAGAAGCGGCCAAGAAGGACTCCGAGTTGATGTCTTTCAGATGTGTTTTGTGGAGGCAAGAGGAAGCTTCGATTTT
species | Selaginella moellendorffii |
transcript | EFJ04682 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atctctctcttttgcacttctttttaggtgaaatttattcttttttctgacacagAAGAGCGTGCATTTCCATTCAGAAGAGAAGCGGCCAAGAAGGACTCCGAGTTGATGTCTTTCAGATGTGTTTTGTGGAGGCAAGAGGAAGCTTCGATTTT
ttctgac putative branch site (score: 2)
tttattcttttttct CT-rich tract
tgaaatttattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctggtatagtagcataaaatttttttttatgatgctaatcaaaatctctctcttttgcacttctttttaggtgaaatttattcttttttctgacacagAAGAGCGTGCATTTCCATTCAGAAGAGAAGCGGCCAAGAAGGACTCCGAGTTGATGTCTTTCAGATGTGTTTTGTGGAGGCAAGAGGAAGCTTCGATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
tgctggt
- - - - -agtagca
- - - - - - - - - - -ttttttt
- - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - aatcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tattctt