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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatttctgttggaggctctgcatgctatcttccttattccatacagtgatatgatgagaaatgtgcggaagtatgacatgggaacattcttgggtatcagGAGTGGAAAGTGGGACAACCTTAAAGGTGCATGGAGAGGGTGGAGAAGGACCCAAAGGTGGCCGACCTGGGAATCTCCTGTTGCAAATCAGA

Basic information

species Physcomitrella patens
transcript PP1S9_364V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162195088|gb|FC368789.1|FC368789
EST:     GGCCGGAGTTGTGAAGGGAAACAGAGAAGTGAGAGTGGATATTCCTGCTG                         GAGTGGAAAGTGGGACAACCTTAAAGGTGCATGGAGAGGGTGGAGAAGGAC
genomic: GGCCGGAGTTGTGAAGGGAAACAGAGAAGTGAGAGTGGATATTCCTGCTGgtcagtatta ... tgggtatcagGAGTGGAAAGTGGGACAACCTTAAAGGTGCATGGAGAGGGTGGAGAAGGAC
EST: gi|208358536|gb|DC946497.1|DC946497
EST:     GGCCGGAGTTGTGAAGGGAAACAGAGAAGTGAGAGTGGATATTCCTGCTG                         GAGTGGAAAGTGGGACAACCTTAAAGGTGCATGGAGAGGGTGGAGAAGGAC
genomic: GGCCGGAGTTGTGAAGGGAAACAGAGAAGTGAGAGTGGATATTCCTGCTGgtcagtatta ... tgggtatcagGAGTGGAAAGTGGGACAACCTTAAAGGTGCATGGAGAGGGTGGAGAAGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatatgatgagaaatgtgcggaagtatgacatgggaacattcttgggtatcagGAGTGGAAAGTGGGACAACCTTAAAGGTGCATGGAGAGGGTGGAGAAGGACCCAAAGGTGGCCGACCTGGGAATCTCCTGTTGCAAATCAGA
                                       cattctt  CT-rich tract