1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaccttttttgtactcctgcatctgaatttacgaagtgtgaaagtaaatttttcatctcaacgatttgtagagttatggtcagagtctctcaagatagaaatgaagtctattactcgtttgattcacggtgtatttaaaatgctagaatgtttggaatgcttttctagGGAACGAGTCTTGGAGTTCCGTGAAGAAGCCGCGAAGTATCAAAGAGAGGAAAGTAAGTTGCAGGACAAGCATGGAGCTTCTGGTCAGAGGAACACATAC
species | Physcomitrella patens |
transcript | PP1S87_157V6.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGGTTGGCAATAATCCTCCCCTTGAGAGACAACATGCCTCACTCCCGAG GGAACGAGTCTTGGAGTTCCGTGAAGAAGCCGCGAAGTATCAAAGAGAGGAEST: gi|208392138|gb|DC957245.1|DC957245
genomic: AAGGTTGGCAATAATCCTCCCCTTGAGAGACAACATGCCTCACTCCCGAGgtaccttttt ... gcttttctagGGAACGAGTCTTGGAGTTCCGTGAAGAAGCCGCGAAGTATCAAAGAGAGGA
EST: AAGGTTGGCAATAATCCTCCCCTTGAGAGACAACATGCCTCACTCCCGAG GGAACGAGTCTTGGAGTTCCGTGAAGAAGCCGCGAAGTATCAAAGAGAGGA
genomic: AAGGTTGGCAATAATCCTCCCCTTGAGAGACAACATGCCTCACTCCCGAGgtaccttttt ... gcttttctagGGAACGAGTCTTGGAGTTCCGTGAAGAAGCCGCGAAGTATCAAAGAGAGGA
ctcgtttgattcacggtgtatttaaaatgctagaatgtttggaatgcttttctagGGAACGAGTCTTGGAGTTCCGTGAAGAAGCCGCGAAGTATCAAAGAGAGGAAAGTAAGTTGCAGGACAAGCATGGAGCTTCTGGTCAGAGGAACACATAC
gtttgat putative branch site (score: 5)
tgcttttct putative PPT
tatttaaaatgcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccttttttgtactcctgcatctgaatttacgaagtgtgaaagtaaatttttcatctcaacgatttgtagagttatggtcagagtctctcaagatagaaatgaagtctattactcgtttgattcacggtgtatttaaaatgctagaatgtttggaatgcttttctagGGAACGAGTCTTGGAGTTCCGTGAAGAAGCCGCGAAGTATCAAAGAGAGGAAAGTAAGTTGCAGGACAAGCATGGAGCTTCTGGTCAGAGGAACACATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA