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...tttatctcttagtttttacagacaatatgtttaagcgttcttatgccagtcttatccacatatcgcgtagcaacattttttattaatataaattgtgcagGTTTAATGTGTGAGCTACTGTGGAGTGATCCTCATCCTGGCACGGGACGTGCACCTAGCAAACGCGGTGTTGGTGTTGCGTTTGGATCAGATGTCACTCA
species | Physcomitrella patens |
transcript | PP1S87_139V6.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTTATCTGATATAGCTGCAATTGAACGGTTTAGGGAGCCTCCTGATGAAG GTTTAATGTGTGAGCTACTGTGGAGTGATCCTCATCCTGGCACGGGACGTGEST: gi|208390866|gb|DC945897.1|DC945897
genomic: GTTATCTGATATAGCTGCAATTGAACGGTTTAGGGAGCCTCCTGATGAAGgtacgtgatg ... aattgtgcagGTTTAATGTGTGAGCTACTGTGGAGTGATCCTCATCCTGGCACGGGACGTG
EST: GTTATCTGATATAGCTGCAATTGAACGGTTTAGGGAGCCTCCTGATGAAG GTTTAATGTGTGAGCTACTGTGGAGTGATCCTCATCCTGGCACGGGACGTGEST: gi|22132216|gb|BQ827040.1|BQ827040
genomic: GTTATCTGATATAGCTGCAATTGAACGGTTTAGGGAGCCTCCTGATGAAGgtacgtgatg ... aattgtgcagGTTTAATGTGTGAGCTACTGTGGAGTGATCCTCATCCTGGCACGGGACGTG
EST: GTTATCTGATATAGCTGCAATTGAACGTTTTAGGGAGCCTCCTGATGAAG GTTTAATGTGTGAGCTACTGTGGAGTGATCCTCATCCTGGCACGGGACGTG
genomic: GTTATCTGATATAGCTGCAATTGAACGGTTTAGGGAGCCTCCTGATGAAGgtacgtgatg ... aattgtgcagGTTTAATGTGTGAGCTACTGTGGAGTGATCCTCATCCTGGCACGGGACGTG
ccagtcttatccacatatcgcgtagcaacattttttattaatataaattgtgcagGTTTAATGTGTGAGCTACTGTGGAGTGATCCTCATCCTGGCACGGGACGTGCACCTAGCAAACGCGGTGTTGGTGTTGCGTTTGGATCAGATGTCACTCA
tattaat putative branch site (score: 2)
tagcaacattttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatctcttagtttttacagacaatatgtttaagcgttcttatgccagtcttatccacatatcgcgtagcaacattttttattaatataaattgtgcagGTTTAATGTGTGAGCTACTGTGGAGTGATCCTCATCCTGGCACGGGACGTGCACCTAGCAAACGCGGTGTTGGTGTTGCGTTTGGATCAGATGTCACTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG