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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcattcatacaatgtgttgtactttcatctcttctgcatcgatattctttcgccccagtcaccacaatactaaagccttccgcacaagattgtatgcgaccactgggcttttagtgccaacagctgatttggttgaagttgatattcatttatagGTAGTGGAGCATGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAG

Basic information

species Physcomitrella patens
transcript PP1S83_234V6.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162155634|gb|FC331559.1|FC331559
EST:     AGACACAAAAGCATGACTTCGTCTTCTATGCTGATCGTTTAATTCGATTG                         GTAGTGGAGCATGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATC
genomic: AGACACAAAAGCATGACTTCGTCTTCTATGCTGATCGTTTAATTCGATTGgtaagtcatt ... tcatttatagGTAGTGGAGCATGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATC
EST: gi|162159567|gb|FC335745.1|FC335745
EST:     AGACACAAAAGCATGACTTCGTCTTCTATGCTGATCGTTTAATTCGATTG                         GTAGTGGAGCATGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATC
genomic: AGACACAAAAGCATGACTTCGTCTTCTATGCTGATCGTTTAATTCGATTGgtaagtcatt ... tcatttatagGTAGTGGAGCATGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATC
EST: gi|162247262|gb|FC423060.1|FC423060
EST:     AGACACAAAAGCATGACTTCGTCTTCTATGCTGATCGTTTAATTCGATTG                         GTAGTGGAGCATGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATC
genomic: AGACACAAAAGCATGACTTCGTCTTCTATGCTGATCGTTTAATTCGATTGgtaagtcatt ... tcatttatagGTAGTGGAGCATGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactgggcttttagtgccaacagctgatttggttgaagttgatattcatttatagGTAGTGGAGCATGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAG
                                            ttcattt  CT-rich tract
                                      ttgatattcatttata  TA-rich tract