1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacataatcggatttacgtttttatttgttcgggtgatatatttccctcaacggaacataagtctattatcaactcaacaatttgaatgttaaagcttctgtttttgaatattttttcagGGAGCGAGTTTTAGAGTTCCGTGAAGAAGCATCAAAATATCAAAGAGAGGATAGTAAGTTGCATGACAAGCATGCAAGTTCTGGTCAGAGGAACGTTTAT
species | Physcomitrella patens |
transcript | PP1S80_71V6.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTCACTCCCAAG GGAGCGAGTTTTAGAGTTCCGTGAAGAAGCATCAAAATATCAAAGAGAGGAEST: gi|37838512|gb|BJ596520.1|BJ596520
genomic: CTCACTCCCAAGgtacataatc ... attttttcagGGAGCGAGTTTTAGAGTTCCGTGAAGAAGCATCAAAATATCAAAGAGAGGA
EST: AAGGGTGGTAACAATCCTCCCCTTGAGAGGCAACATGCCTCACTCCCAAG GGAGCGAGTTTTAGAGTTCCGTGAAGAAGCATCAAAATATCAAAGAGAGGAEST: gi|162156766|gb|FC333583.1|FC333583
genomic: AAGGGTGGTAACAATCCTCCCCTTGAGAGGCAACATGCCTCACTCCCAAGgtacataatc ... attttttcagGGAGCGAGTTTTAGAGTTCCGTGAAGAAGCATCAAAATATCAAAGAGAGGA
EST: CTCACTCCCAAG GGAGCGAGTTTTAGAGTTCCGTGAAGAAGCATCAAAATATCAAAGAGAGGAEST: gi|37851583|gb|BJ609591.1|BJ609591
genomic: CTCACTCCCAAGgtacataatc ... attttttcagGGAGCGAGTTTTAGAGTTCCGTGAAGAAGCATCAAAATATCAAAGAGAGGA
EST: CCCTTGAGAGGCAACATGCCTCACTCCCAAG GGAGCGAGTTTTAGAGTTCCGTGAAGAAGCATCAAAATATCAAAGAGAGGAEST: gi|37838906|gb|BJ596914.1|BJ596914
genomic: CCCTTGAGAGGCAACATGCCTCACTCCCAAGgtacataatc ... attttttcagGGAGCGAGTTTTAGAGTTCCGTGAAGAAGCATCAAAATATCAAAGAGAGGA
EST: AAGGGTGGTAACAATCCTCCCCTTGAGAGGCAACATGCCTCACTCCCAAG GGAGCGAGTTTTAGAGTTCCGTGAAGAAGCATCAAAATATCAAAGAGAGGA
genomic: AAGGGTGGTAACAATCCTCCCCTTGAGAGGCAACATGCCTCACTCCCAAGgtacataatc ... attttttcagGGAGCGAGTTTTAGAGTTCCGTGAAGAAGCATCAAAATATCAAAGAGAGGA
attatcaactcaacaatttgaatgttaaagcttctgtttttgaatattttttcagGGAGCGAGTTTTAGAGTTCCGTGAAGAAGCATCAAAATATCAAAGAGAGGATAGTAAGTTGCATGACAAGCATGCAAGTTCTGGTCAGAGGAACGTTTAT
tattttttc CT-rich tract
ttctgtttttgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacataatcggatttacgtttttatttgttcgggtgatatatttccctcaacggaacataagtctattatcaactcaacaatttgaatgttaaagcttctgtttttgaatattttttcagGGAGCGAGTTTTAGAGTTCCGTGAAGAAGCATCAAAATATCAAAGAGAGGATAGTAAGTTGCATGACAAGCATGCAAGTTCTGGTCAGAGGAACGTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA