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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagctgttcatctattctgttcttttgctccccttcatcacaaattaggaattctttcgtgtccaggacttctgtatgatatgttgagattgtttgctccagGTTTGTACAACGGGGATTTGCGAAATGTGAGCTCGATGCACTTCCACAAGAGAGGCAGGCCCGAGTCAATTTTTCACGGGGCTCTAAATATTATCTGAAA

Basic information

species Physcomitrella patens
transcript PP1S7_178V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162152228|gb|FC328207.1|FC328207
EST:     AAGCTGGGCTTGGAGAAACTTTTTCTTCTTACAACCCGCACTGCTGACTG                         GTTTGTACAACGGGGATTTGCGAAATGTGAGCTCGATGCACTTCCACAAGA
genomic: AAGCTGGGCTTGGAGAAACTTTTTCTTCTTACAACCCGCACTGCTGACTGgtcagctgtt ... tttgctccagGTTTGTACAACGGGGATTTGCGAAATGTGAGCTCGATGCACTTCCACAAGA
EST: gi|37825148|gb|BJ583214.1|BJ583214
EST:     AAGCTGGGCTTGGAGAAACTTTTTCTTCTTACAACCCGCACTGCTGACTG                         GTTTGTACAACGGGGATTTGCGAAATGTGAGCTCGATGCACTTCCACAAGA
genomic: AAGCTGGGCTTGGAGAAACTTTTTCTTCTTACAACCCGCACTGCTGACTGgtcagctgtt ... tttgctccagGTTTGTACAACGGGGATTTGCGAAATGTGAGCTCGATGCACTTCCACAAGA
EST: gi|162152229|gb|FC328208.1|FC328208
EST:     AAGCTGGGCTTGGAGAAACTTTTTCTTCTTACAACCCGCACTGCTGACTG                         GTTTGTACAACGGGGATTTGCGAAATGTGAGCTCGATGCACTTCCACAAGA
genomic: AAGCTGGGCTTGGAGAAACTTTTTCTTCTTACAACCCGCACTGCTGACTGgtcagctgtt ... tttgctccagGTTTGTACAACGGGGATTTGCGAAATGTGAGCTCGATGCACTTCCACAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaattctttcgtgtccaggacttctgtatgatatgttgagattgtttgctccagGTTTGTACAACGGGGATTTGCGAAATGTGAGCTCGATGCACTTCCACAAGAGAGGCAGGCCCGAGTCAATTTTTCACGGGGCTCTAAATATTATCTGAAA
                                             tttgctcc  CT-rich tract
                           tatgatat  TA-rich tract