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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcggcactgctctgatagtttgaggcgggctctctggtactaccaaaaccatgccgcatgtacgagctccctgttcgtttgtttccagtttagggcttttaattgacatagctacatgtttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGGACCATGGTCGCTGGGGGAGGTGCAAGTGTTATCTACTCTGATACG

Basic information

species Physcomitrella patens
transcript PP1S7_156V6.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S7_156V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: GRMZM2G107082_T01 (Zea mays), 3'ss of exon 6
-------------gtatgcggcactgctctgatagtttgaggcgggctctctggtactaccaaaaccatgccgcatgtacgagctccctgttcgtt-tgtttccagtttagggcttttaattgacatagctacatgtttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGGACCATGGTCGCTGGGGGAGGTGCAAGTGTTATCTACTCTGATACG
             |  |  |    |    |     |||   | || || ||  ||| ||  | || ||     ||| ||  |   |    |  |   ||| | | ||| | |  | ||||||  |  | ||   ||||  ||| |||||  |||||||  |||| || ||  | ||||||||  |||| || |||||||||||||||||||| || ||||| ||||| || ||  ||||||| 
gtattgatctcagggctatgtttttatcttttattttttctgaggtctatcatgta-taaaataatcagtttccat-tagaaatactagatctggagtgtattctgttgacgtgtgttaattcgccaacct---tgtt--atttcagACAAGTGCCTCTCTGAAGTTCACGGTTTTGAACCCGAAAGGTCGCATCTGGACCATGGTCGCTGGTGGTGGTGCTAGTGTCATTTATGCTGATACA

upper sequence: PP1S7_156V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: GLYMA02G04120.2 (Glycine max), 3'ss of exon 8
gtatgcggcactgctctgatagtttgaggcgggctctctggtactaccaaaaccatgccgcatg-tacgagctccctgtt-cgtttgtttccagtttagggcttttaattgacatagctacatgtttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGGACCATGGTCGCTGGGGGAGGTGCAAGTGTTATCTACTCTGATACG
                                 ||  | |     | ||  |   |   | |     | |     || || | | |  ||  | ||| |     ||||||    |   ||  |  |   ||||||||  |||| ||||| ||||| ||| | ||||||||| | |||||||| ||||| ||||| |||||||||||||| |||||||||||  ||||||||
---------------------------------ctaacagcagtcatcagtaatgtattgaagaacgcaataatactattgcttatagttgtaattttga-tacttaatttgtttgtttatttact-atttgcagACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTTATCTATGCTGATACG

upper sequence: PP1S7_156V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: GLYMA15G42140.2 (Glycine max), 3'ss of exon 7
gtatgcggcactgctctgatagtttgaggcgggctctctggtactaccaaaaccatgccgcatgta-cgagctccctgtt-cgtttgtttccagtttagggcttttaattgacata-gctacatgtttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGGACCATGGTCGCTGGGGGAGGTGCAAGTGTTATCTACTCTGATACG
                                   ||||  |   | || ||   |   || | ||   | |    || |     |  ||  |  | |   ||| | ||     |  | |   | | || |  |||||  |||| || |||||||| ||| | || |||||    |||||||| ||||| ||||| |||||||||||||| |||||||||||  ||||||||
-----------------------------------ctcttat-taatcataattttattgcttctagtaatcatggtgctataaattcttttacataaacacttatgatgtttgtttgtttgttttctgttcccagACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTTGCTGGGGGAGGTGCTAGTGTTATCTATGCTGATACG

upper sequence: PP1S7_156V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: GLYMA01G03530.1 (Glycine max), 3'ss of exon 8
gtatgcggcactgctctgatagtttgaggcgggctctctggtactaccaaaaccatgccgcatgtacgagctccctgttcgtttgtttccagtt-tagggcttttaattgacatagctacatgtttga---ttgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGGACCATGGTCGCTGGGGGAGGTGCAAGTGTTATCTACTCTGATACG
                                 ||  | | |   | ||  |   |   | ||| | |   |     | |  ||| ||  |||| ||    |  ||||| |  |   |   | |||     ||||||||  |||| ||||| ||||| ||| | ||||||||  | |||||||| ||||| ||||| |||||||||||||| ||||| || ||  ||||||||
---------------------------------ctaacagctgtcatcagtaatgtattg-atgaatgcaata---atactattgcttatagttgtaattttgataattaatttgtttgtttatttactatttgcagACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCAAAGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATTTATGCTGATACG

upper sequence: PP1S7_156V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: GLYMA08G17010.2 (Glycine max), 3'ss of exon 8
gtatgcggcactgctctgatagtttgaggcgggctctctggtactaccaaaaccatgccgcatgtacgagct----ccctgttcgtttgtttccagtttagggcttttaattgacatagctacatgtttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGGACCATGGTCGCTGGGGGAGGTGCAAGTGTTATCTACTCTGATACG
                                  |||||  | | | || ||   |   || | ||  |       | || |   ||  ||| ||  |    |||| | ||     |   ||  | | || |  |||||  |||| || |||||||| ||| | || |||||    |||||||| ||||| ||||| |||||||||||||| ||||| |||||  ||||||||
---------------------------------atctcttat-caatcacaattttattgcttctagtaatcatggcgctataaattcttttacatat--acgcttatgatgtttgtgtttattt-tctgttcccagACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATCTATGCTGATACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67699027|gb|BJ959260.1|BJ959260
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|162274022|gb|FC450369.1|FC450369
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208374183|gb|DC945229.1|DC945229
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208371001|gb|DC944376.1|DC944376
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208362836|gb|DC950636.1|DC950636
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208384409|gb|DC928160.1|DC928160
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|162270681|gb|FC446294.1|FC446294
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCCCCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208369217|gb|DC956050.1|DC956050
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208367644|gb|DC955003.1|DC955003
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATACACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|37846179|gb|BJ604187.1|BJ604187
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCNTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|162203672|gb|FC378547.1|FC378547
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|67701044|gb|BJ961277.1|BJ961277
EST:     AAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: AAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208374459|gb|DC948435.1|DC948435
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208366133|gb|DC955234.1|DC955234
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|162198094|gb|FC372121.1|FC372121
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|67724921|gb|BJ975180.1|BJ975180
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208379626|gb|DC927123.1|DC927123
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208386150|gb|DC949061.1|DC949061
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208364385|gb|DC950686.1|DC950686
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTNGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208390780|gb|DC945853.1|DC945853
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|37851290|gb|BJ609298.1|BJ609298
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208386182|gb|DC949093.1|DC949093
EST:     CCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: CCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|37845304|gb|BJ603312.1|BJ603312
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208370928|gb|DC944303.1|DC944303
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|67725040|gb|BJ975299.1|BJ975299
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208364465|gb|DC958034.1|DC958034
EST:     GCANGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         NCCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|67720385|gb|BJ970644.1|BJ970644
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208354287|gb|DC957465.1|DC957465
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208360305|gb|DC950250.1|DC950250
EST:     CAGGACAATGAGTCCNGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: CAGGACAATGAGTCC-GGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
EST: gi|208379943|gb|DC927669.1|DC927669
EST:     GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG                         ACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG
genomic: GCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 21

ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAGgtatgcggca ... ttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGGACCATGGTCGCTGGGGGAGGTGCAAGTGTTATCTACTCTGATACG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtttgtttccagtttagggcttttaattgacatagctacatgtttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGGACCATGGTCGCTGGGGGAGGTGCAAGTGTTATCTACTCTGATACG
                      ttttaattgacata  TA-rich tract