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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctcaaagccagttgctaaggggattccttttggtgtactaaaatatttgtaatgttgttgtggaagtaacgttcttatgaattgacctgctggttgtagGGGTCTGAGCAATACCTCGCTGCATGGCACTCTGAGTACGTCTATGCTTAAACGCTTCACAAAGCTAAGGACAAT

Basic information

species Physcomitrella patens
transcript PP1S76_90V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162174621|gb|FC350276.1|FC350276
EST:     CTAGATATTTCTGCCTCGCTGCAAAATGTCAATGAGAATCTACTATCTCT                         GGGTCTGAGCAATACCTCGCTGCATGGCACTCTGAGTACGTCTATGCTTAA
genomic: CTAGATATTTCTGCCTCGCTGCAAAATGTCAATGAGAATCTACTATCTCTgtgagtgaag ... ctggttgtagGGGTCTGAGCAATACCTCGCTGCATGGCACTCTGAGTACGTCTATGCTTAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgtaatgttgttgtggaagtaacgttcttatgaattgacctgctggttgtagGGGTCTGAGCAATACCTCGCTGCATGGCACTCTGAGTACGTCTATGCTTAAACGCTTCACAAAGCTAAGGACAAT
                              ttatgaatt  TA-rich tract