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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcttctgctcatcttattttcaagaaacttggagtttgtcatttattgaaaatgaaatgtttgaacaagttgaacttacgtcgtctgtgcggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCAAGTTCAAGGCTGGGAG

Basic information

species Physcomitrella patens
transcript PP1S74_140V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208376489|gb|DC922520.1|DC922520
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208364850|gb|DC957887.1|DC957887
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208372243|gb|DC948046.1|DC948046
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|162162985|gb|FC338167.1|FC338167
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGGCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208356591|gb|DC922381.1|DC922381
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|37839167|gb|BJ597175.1|BJ597175
EST:     GCTCCGTTCATNTGCCAGTTCTTTAAGGACCCTNTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208383807|gb|DC928082.1|DC928082
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208386389|gb|DC937056.1|DC937056
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCA
EST: gi|208345159|gb|DC925457.1|DC925457
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208360344|gb|DC930753.1|DC930753
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGANCTTTTCCC                         TTACGTGGATTTCATTTTCGGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCA
EST: gi|162175919|gb|FC351597.1|FC351597
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGA
EST: gi|162227965|gb|FC404585.1|FC404585
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|162163035|gb|FC338425.1|FC338425
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|67699393|gb|BJ959626.1|BJ959626
EST:     GCTCCGTTCATNTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|37843958|gb|BJ601966.1|BJ601966
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208362330|gb|DC954576.1|DC954576
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208347730|gb|DC925603.1|DC925603
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|162160597|gb|FC337172.1|FC337172
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208354863|gb|DC934367.1|DC934367
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACC-TCTTATG-ANCTTTTCCC                         TTACGTGGATT-CATTT
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTT
EST: gi|162227966|gb|FC404586.1|FC404586
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCG
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCG
EST: gi|208386871|gb|DC941575.1|DC941575
EST:     GCTCCGTTCATCTGCCANTTCTTTAAGGACCCTCTTATGGANCTTTNCC-                         TTAC-TG-ANTTCATTTTC
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTC
EST: gi|208394555|gb|DC953594.1|DC953594
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208374223|gb|DC945269.1|DC945269
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208356999|gb|DC930029.1|DC930029
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTT
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTT
EST: gi|162184644|gb|FC360842.1|FC360842
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208379780|gb|DC911665.1|DC911665
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTNACGTGGATT-CATTTTC
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTT-ACGTGGATTTCATTTTC
EST: gi|67720670|gb|BJ970929.1|BJ970929
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTNTTATGGAGCTTTTCCC                         TTACGTGGATTTCACTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|67718979|gb|BJ969238.1|BJ969238
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|162184643|gb|FC360841.1|FC360841
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|100383558|gb|BY950342.1|BY950342
EST:     GCTCCGGTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGCCAAC
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAAC
EST: gi|208353070|gb|DC926093.1|DC926093
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208368488|gb|DC947889.1|DC947889
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208369247|gb|DC944564.1|DC944564
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208398364|gb|DC912321.1|DC912321
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTT-CCC                         TTACGTGGATTTCATTT-CGGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCA
EST: gi|208395850|gb|DC924260.1|DC924260
EST:     GCTCCGTTCATNTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208358332|gb|DC930717.1|DC930717
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATT-CATTTTCGGCANCGAGAGCGAGGCCANA-CATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|37841119|gb|BJ599127.1|BJ599127
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|162160598|gb|FC337173.1|FC337173
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|67727318|gb|BJ977577.1|BJ977577
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208353472|gb|DC938707.1|DC938707
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCC-                         TTACGTGGATTNCATTTTCGGCAACGAGAGCGAGGC
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGC
EST: gi|208365534|gb|DC954775.1|DC954775
EST:     GCTCCG-TCATNTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTT-CC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208347297|gb|DC925321.1|DC925321
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTNTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|162175918|gb|FC351596.1|FC351596
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208394056|gb|DC957137.1|DC957137
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208399501|gb|DC908498.1|DC908498
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACC-TCTTATGGAGCTTT-CCC                         TTACGTGGATT-CATTT
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTT
EST: gi|208346565|gb|DC916831.1|DC916831
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|18340220|gb|BJ172248.1|BJ172248
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208367374|gb|DC951292.1|DC951292
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208356213|gb|DC957331.1|DC957331
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTNTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|37845825|gb|BJ603833.1|BJ603833
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|208374190|gb|DC945236.1|DC945236
EST:     GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|162209215|gb|FC385434.1|FC385434
EST:     GGACCCTCTTATGGAGCTTTTCCC                         TTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
genomic: GGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCA
EST: gi|100370755|gb|BY948500.1|BY948500
EST:     CTCCGTTCATCTGCCAGTTCTTTAAGGGACC-TCTNATGGAGCTTTTCCC                         TTTACGTGGATT-CATTT-CNNGCA-CGAGAGCGAGGCCAGAGCATTTG
genomic: CTCCGTTCATCTGCCAGTTCTTTAAGG-ACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTT-ACGTGGATTTCATTTTCG-GCAACGAGAGCGAGGCCAGAGCATTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 6

TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCCgtgagtgctt ... ggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCAAGTTCAAGGCTGGGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaaaatgaaatgtttgaacaagttgaacttacgtcgtctgtgcggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCAAGTTCAAGGCTGGGAG
                           aacttac  putative branch site (score: 6)
     aatgaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgcttctgctcatcttattttcaagaaacttggagtttgtcatttattgaaaatgaaatgtttgaacaagttgaacttacgtcgtctgtgcggtgctgcagTTACGTGGATTTCATTTTCGGCAACGAGAGCGAGGCCAGAGCATTTGCGCAAGTTCAAGGCTGGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA