1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgcttgcagacttcttggactagagctactgcacttgtgttatctttattgcactagtagctcagctgatgttgtatgataccggctttacagctttatggcttgatgctgttgtgtggccaaattttaaacggtattagaaaattatgttctaacttatttgggctgtttcccacagGAAATTTTGTTGAGGGTTTGCTGCTCTATGCTTCTATGCTTGAGAAGCCGGCTTTTAGCTGGGGACTTCACAACAAACCTGAAGCTTCTTCAGCATTATC
species | Physcomitrella patens |
transcript | PP1S73_37V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGCAACCCCGATGGTCCACTG GAAATTTTGTTGAGGGTTTGCTGCTCTATGCTTCTATGC-TGNAGAAGCCGEST: gi|67696141|gb|BJ956374.1|BJ956374
genomic: AGCAACCCGGATGGTCCACTGgtatgcttgc ... tttcccacagGAAATTTTGTTGAGGGTTTGCTGCTCTATGCTTCTATGCTTG-AGAAGCCG
EST: ACTCTATTCGTCTTTGGGATTCTCTTCTTAGCAACCCGGATGGTCCACTG GAAATTTTGTTGAGGGTTTGCTGCTCTATGCTTCTATGCTTGAGAAGCCGG
genomic: ACTCTATTCGTCTTTGGGATTCTCTTCTTAGCAACCCGGATGGTCCACTGgtatgcttgc ... tttcccacagGAAATTTTGTTGAGGGTTTGCTGCTCTATGCTTCTATGCTTGAGAAGCCGG
attttaaacggtattagaaaattatgttctaacttatttgggctgtttcccacagGAAATTTTGTTGAGGGTTTGCTGCTCTATGCTTCTATGCTTGAGAAGCCGGCTTTTAGCTGGGGACTTCACAACAAACCTGAAGCTTCTTCAGCATTATC
ttctaac putative branch site (score: 1)
ctgtttccc putative PPT
tattagaaaattatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttgcagacttcttggactagagctactgcacttgtgttatctttattgcactagtagctcagctgatgttgtatgataccggctttacagctttatggcttgatgctgttgtgtggccaaattttaaacggtattagaaaattatgttctaacttatttgggctgtttcccacagGAAATTTTGTTGAGGGTTTGCTGCTCTATGCTTCTATGCTTGAGAAGCCGGCTTTTAGCTGGGGACTTCACAACAAACCTGAAGCTTCTTCAGCATTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC