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gtaagcaatctattcagtctctcttttcacttctttgaattcgttttttaagatcttgatttatggtttgtgtgctttcctaaattgggatatggagtaatctgtctggttattaaagcactgtcattgtgaaatttttctcgcagGTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAATCCATCCGGGAAGAAGCCGAGGCGATGAAGCCAGAGACGTAGTTTAGGT
species | Physcomitrella patens |
transcript | PP1S71_187V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCT GTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAAEST: gi|67694755|gb|BJ954988.1|BJ954988
genomic: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCTgtaagcaatc ... tttctcgcagGTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAA
EST: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCT GTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAAEST: gi|162219672|gb|FC395876.1|FC395876
genomic: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCTgtaagcaatc ... tttctcgcagGTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAA
EST: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCT GTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAAEST: gi|67698963|gb|BJ959196.1|BJ959196
genomic: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCTgtaagcaatc ... tttctcgcagGTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAA
EST: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCT GTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAAEST: gi|15590673|gb|BI675289.1|BI675289
genomic: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCTgtaagcaatc ... tttctcgcagGTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAA
EST: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCT GTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAAEST: gi|208381504|gb|DC919506.1|DC919506
genomic: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCTgtaagcaatc ... tttctcgcagGTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAA
EST: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCT GTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAAEST: gi|162202798|gb|FC379780.1|FC379780
genomic: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCTgtaagcaatc ... tttctcgcagGTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAA
EST: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCT GTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAAEST: gi|16137490|gb|BI894354.1|BI894354
genomic: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCTgtaagcaatc ... tttctcgcagGTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAA
EST: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCT GTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAAEST: gi|18339257|gb|BJ171284.1|BJ171284
genomic: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCTgtaagcaatc ... tttctcgcagGTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAA
EST: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCANATTAANTGCT GTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTC
genomic: CTGCAATCGAGGTTGCCAAGAGACCAGAAAATAAGGGCAAATTAATTGCTgtaagcaatc ... tttctcgcagGTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTC
atggagtaatctgtctggttattaaagcactgtcattgtgaaatttttctcgcagGTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAATCCATCCGGGAAGAAGCCGAGGCGATGAAGCCAGAGACGTAGTTTAGGT
tttttctcgc CT-rich tract
attgtgaaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaatctattcagtctctcttttcacttctttgaattcgttttttaagatcttgatttatggtttgtgtgctttcctaaattgggatatggagtaatctgtctggttattaaagcactgtcattgtgaaatttttctcgcagGTGGTTCTTCCTAGCTTTGGGGAGCGGTATTTGTCTTCAGTTCTGTTTCAATCCATCCGGGAAGAAGCCGAGGCGATGAAGCCAGAGACGTAGTTTAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC