1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagatttaaggatcgtcatgagatgacgttatgatgttggagcttaatttctattgttgcaagtgattttggtattttgcgatttacatctaactagtttctcgtttgtgtaaaatatgtagACGTATCTGTAACTGTGTTGGTCATCTTTTTAATGATGGCGGTGGCTGTTACCCCCACTGTGGGTTACAA
species | Physcomitrella patens |
transcript | PP1S68_234V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCGTTCATTCCAG ACGTATCTGTAACTGTG-TNGTCATC-TTTTAATGATGGCNGTGGCTGTTAEST: gi|208389101|gb|DC945677.1|DC945677
genomic: TTCGTTCATTCCAGgtaagattta ... aaatatgtagACGTATCTGTAACTGTGTTGGTCATCTTTTTAATGATGGCGGTGGCTGTTA
EST: TGAGTATGATTTCGTTCANTCCAG ACGTATCTGTAACTGTGTTGGTCATCTTTTTAATGATGGCGGTGGCTGTTAEST: gi|208400731|gb|DC904909.1|DC904909
genomic: TGAGTATGATTTCGTTCATTCCAGgtaagattta ... aaatatgtagACGTATCTGTAACTGTGTTGGTCATCTTTTTAATGATGGCGGTGGCTGTTA
EST: GANTGTTAAGAAGGTTGTTCCAGGTCTGANTATGATTTCGTTCATTCNAA ACGTATCTGTAACTGTGT-GGNCATCTTTTEST: gi|208378180|gb|DC918801.1|DC918801
genomic: GAGTGTTAAGAAGGTTGTTCCAGGTCTGAGTATGATTTCGTTCATTCCAGgtaagattta ... aaatatgtagACGTATCTGTAACTGTGTTGGTCATCTTTT
EST: GTCTGAGTATGA-TTCGNTCATTCCAG ACGTATCTGTAACTGTG-TGGTCATC-TTTTAATGATGGCGGTGGCTGTTAEST: gi|208365198|gb|DC931164.1|DC931164
genomic: GTCTGAGTATGATTTCGTTCATTCCAGgtaagattta ... aaatatgtagACGTATCTGTAACTGTGTTGGTCATCTTTTTAATGATGGCGGTGGCTGTTA
EST: GAGTGTTAANAANGTNGTTCCAGGTCTGAATATGANTTCGTTCATNCCAA ACGTATCTGTAACTGNGTTGGTCATCTTTT-AATGA
genomic: GAGTGTTAAGAAGGTTGTTCCAGGTCTGAGTATGATTTCGTTCATTCCAGgtaagattta ... aaatatgtagACGTATCTGTAACTGTGTTGGTCATCTTTTTAATGA
tttggtattttgcgatttacatctaactagtttctcgtttgtgtaaaatatgtagACGTATCTGTAACTGTGTTGGTCATCTTTTTAATGATGGCGGTGGCTGTTACCCCCACTGTGGGTTACAA
atctaac putative branch site (score: 2)
tttgtgtaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatttaaggatcgtcatgagatgacgttatgatgttggagcttaatttctattgttgcaagtgattttggtattttgcgatttacatctaactagtttctcgtttgtgtaaaatatgtagACGTATCTGTAACTGTGTTGGTCATCTTTTTAATGATGGCGGTGGCTGTTACCCCCACTGTGGGTTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT