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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttctcctccctactgcttttgtcatacttctctcatatacccgtaagatgaattttcccacgtgagtaggaccaacaaactttgcgatttgtgatcagGTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGTGATATCATCCTCGGAATTGCTACTGCTGGCAATCTCTACATGAGTGAGA

Basic information

species Physcomitrella patens
transcript PP1S66_139V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67691624|gb|BJ951857.1|BJ951857
EST:     CGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCT                         GTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGT
genomic: CGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCTgtaagaatcg ... ttgtgatcagGTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGT
EST: gi|162184035|gb|FC359405.1|FC359405
EST:     CGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCT                         GTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGT
genomic: CGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCTgtaagaatcg ... ttgtgatcagGTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGT
EST: gi|67725192|gb|BJ975451.1|BJ975451
EST:     CGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCT                         GTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGT
genomic: CGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCTgtaagaatcg ... ttgtgatcagGTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagatgaattttcccacgtgagtaggaccaacaaactttgcgatttgtgatcagGTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGTGATATCATCCTCGGAATTGCTACTGCTGGCAATCTCTACATGAGTGAGA
     tgaatttt  TA-rich tract