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gtatgtgttctatgctggctatgaactttatgcaaaatgaagtctagccctcgccctgaactaacatccgcaggagcataatttaggatacggtactgaagtgagtattcgacttgtgtgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTATACGCTGCAGAGAG
species | Physcomitrella patens |
transcript | PP1S64_220V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATG ATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTAEST: gi|162170440|gb|FC347625.1|FC347625
genomic: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATGgtatgtgttc ... tgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTA
EST: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATG ATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTAEST: gi|162166217|gb|FC343434.1|FC343434
genomic: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATGgtatgtgttc ... tgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTA
EST: CTGGGCAAATAATG ATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTAEST: gi|162154421|gb|FC330423.1|FC330423
genomic: CTGGGCAAATAATGgtatgtgttc ... tgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTA
EST: ACGTCACTGGGCAAATAATG ATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTAEST: gi|162156210|gb|FC332585.1|FC332585
genomic: ACGTCACTGGGCAAATAATGgtatgtgttc ... tgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTA
EST: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATG ATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTAEST: gi|162165158|gb|FC341153.1|FC341153
genomic: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATGgtatgtgttc ... tgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTA
EST: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATG ATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTAEST: gi|162170441|gb|FC347626.1|FC347626
genomic: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATGgtatgtgttc ... tgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTA
EST: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATG ATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTAEST: gi|162191349|gb|FC368145.1|FC368145
genomic: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATGgtatgtgttc ... tgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTA
EST: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATG ATGGGTCTGATGGTCAAACCTCCCAGACCAGGCGACGTCTCGTTTCCTCTAEST: gi|162182492|gb|FC357467.1|FC357467
genomic: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATGgtatgtgttc ... tgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTA
EST: GCTCTGAGCCCCAACGTCACTGGGCAAATAATG ATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTAEST: gi|162246304|gb|FC421049.1|FC421049
genomic: GCTCTGAGCCCCAACGTCACTGGGCAAATAATGgtatgtgttc ... tgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTA
EST: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATG ATGGGTCTGATGGTCAAACCTCCAAEST: gi|161978655|gb|EE296353.1|EE296353
genomic: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATGgtatgtgttc ... tgtgttgtagATGGGTCTGATGGTCAAACCTCCAA
EST: CAAGGTTGCCTCGTATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATG ATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGNTTTCCTCTEST: gi|162244637|gb|FC424604.1|FC424604
genomic: CAAGGTTGCCTCG-ATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATGgtatgtgttc ... tgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCG-TTTCCTCT
EST: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATG ATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTAEST: gi|162188744|gb|FC364030.1|FC364030
genomic: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATGgtatgtgttc ... tgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTA
EST: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATG ATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTA
genomic: ACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCACTGGGCAAATAATGgtatgtgttc ... tgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTA
gagcataatttaggatacggtactgaagtgagtattcgacttgtgtgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTATACGCTGCAGAGAG
taattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgttctatgctggctatgaactttatgcaaaatgaagtctagccctcgccctgaactaacatccgcaggagcataatttaggatacggtactgaagtgagtattcgacttgtgtgtgttgtagATGGGTCTGATGGTCAAACCTCCAAGACCAGGCGACGTCTCGTTTCCTCTATACGCTGCAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG