1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagttcgatttttaactattgcagaggggctgttttcggagtggtaattcatttatcattgtcaattgactttggttttgagtcacgtctacatgaagtcgatttctcaccgcttcaactgtctctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGAAGTACATGGAGAAGGCATACCTCAGCATCAAGAGCACTTGCCAAACTC
species | Physcomitrella patens |
transcript | PP1S62_236V6.4 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|162253970|gb|FC430214.1|FC430214
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|162202603|gb|FC378961.1|FC378961
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|37825246|gb|BJ583312.1|BJ583312
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|37823205|gb|BJ581271.1|BJ581271
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: GTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|162176129|gb|FC351078.1|FC351078
genomic: GTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|162275835|gb|FC451396.1|FC451396
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|162196718|gb|FC373838.1|FC373838
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|19790576|gb|BQ041944.1|BQ041944
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTNGAAEST: gi|37826170|gb|BJ584182.1|BJ584182
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCT-GAA
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|37845947|gb|BJ603955.1|BJ603955
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|37842259|gb|BJ600267.1|BJ600267
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|37839593|gb|BJ597601.1|BJ597601
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGNTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|37848425|gb|BJ606433.1|BJ606433
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|162167227|gb|FC342792.1|FC342792
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|67697002|gb|BJ957235.1|BJ957235
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|37827344|gb|BJ585356.1|BJ585356
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|37828278|gb|BJ586290.1|BJ586290
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|162277507|gb|FC453450.1|FC453450
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|37852839|gb|BJ610847.1|BJ610847
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|37838997|gb|BJ597005.1|BJ597005
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|208378444|gb|DC923080.1|DC923080
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|162162142|gb|FC337716.1|FC337716
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|37826352|gb|BJ584364.1|BJ584364
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|162194067|gb|FC370242.1|FC370242
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|162151268|gb|FC327722.1|FC327722
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|37839189|gb|BJ597197.1|BJ597197
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|162244814|gb|FC425470.1|FC425470
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|67696602|gb|BJ956835.1|BJ956835
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGEST: gi|162196717|gb|FC373837.1|FC373837
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
gagtcacgtctacatgaagtcgatttctcaccgcttcaactgtctctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGAAGTACATGGAGAAGGCATACCTCAGCATCAAGAGCACTTGCCAAACTC
ttctcac putative branch site (score: 2)
tctctgttt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcgatttttaactattgcagaggggctgttttcggagtggtaattcatttatcattgtcaattgactttggttttgagtcacgtctacatgaagtcgatttctcaccgcttcaactgtctctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAGAAGTACATGGAGAAGGCATACCTCAGCATCAAGAGCACTTGCCAAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA