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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgggtcatagaaagagaaggtagttttggagaaggtgaagtgggcggacgttgagggggagaggttggaactgaccggattggagggggcgatgtttcagATGTGAAGGATATCAAGTGCGTGATCAACTACGACTTTCCGGGTTCGTGTGAAGACTACGTGCACCGGATTGGTCGCACAGGACGTGCTGGTGCGAAGGG

Basic information

species Physcomitrella patens
transcript PP1S59_81V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100353753|gb|BY983293.1|BY983293
EST:     TGGGAAGAGTCCTATCATGACGGCCACTGATGTCGCTGCGCGTGGTTTGG                         ATGTGAAGGATATCAAGTGCGTGATCAACTACGACTTTCCGGGTTCGTGTG
genomic: TGGGAAGAGTCCTATCATGACGGCCACTGATGTCGCTGCGCGTGGTTTGGgtatgtgcgg ... gatgtttcagATGTGAAGGATATCAAGTGCGTGATCAACTACGACTTTCCGGGTTCGTGTG
EST: gi|162275796|gb|FC451149.1|FC451149
EST:     TGGGAAGAGTCCTATCATGACGGCCACTGATGTCGCTGCGCGTGGTTTGG                         ATGTGAAGGATATCAAGTGCGTGATCAACTACGACTTTCCGGGTTCGTGTG
genomic: TGGGAAGAGTCCTATCATGACGGCCACTGATGTCGCTGCGCGTGGTTTGGgtatgtgcgg ... gatgtttcagATGTGAAGGATATCAAGTGCGTGATCAACTACGACTTTCCGGGTTCGTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggacgttgagggggagaggttggaactgaccggattggagggggcgatgtttcagATGTGAAGGATATCAAGTGCGTGATCAACTACGACTTTCCGGGTTCGTGTGAAGACTACGTGCACCGGATTGGTCGCACAGGACGTGCTGGTGCGAAGGG
                       aactgac  putative branch site (score: 2)