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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtatgaaatttcctacgttacagttgagaattgaggacgttttttttggggatatattggttctgtgatacacaccccaaaagtcatttccattattttctgagtcgcattcgcttcgtggtgttatgcatgcagGTTGATGAGTGGTGGGAACAGCCAGCAGCTACTGTGGTTGACTGGGTCTCTGTTGATGGCCAGAACGTTGGTGCTTGGTTGGCCCTTGTGAAACAACTTC

Basic information

species Physcomitrella patens
transcript PP1S58_171V6.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S58_171V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: GLYMA08G27740.1 (Glycine max), 3'ss of exon 9
gtaagtgtatgaaatttcctacgttacagttgagaattgaggacgttttttttggggatatattggttctgtgatacacaccccaaaagtcatttccattattttctgagtcgcattcgcttcgtggtgttatgca-tgcagGTTGATGAGTGGTGGGAACAGCCAGCAGCTACTGTGGTTGACTGGGTCTCTGTTGATGGCCAGAACGTTGGTGCTTGGTTGGCCCTTGTGAAACAACTTC
                                    |  | |  | ||  |||||   |  ||    |  ||| || ||    ||     | || | || |  ||   | |   |||       ||||    |    ||||| |||||||||||||||| ||||||||| | || || |||||||||||  | || ||||| || || ||   ||| |||      | ||||||||| ||||
------------------------------------tcaaagttgcttaatttggtatttcatgatctgggtggtagacttttca-----cgttcctataaaatttccatttctatt-ataaaatggtaacctcttctgcagCTTGATGAGTGGTGGGAGCAGCCAGCATCGACAGTTGTTGACTGGGTAACAGTGGATGGGCAAAATGTAACTGCCTGGCATAATCATGTGAAACAGCTTC

upper sequence: PP1S58_171V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: GLYMA18G50960.1 (Glycine max), 3'ss of exon 9
gtaagtgtatgaaatttcctacgttacagttgagaattgaggacgttttttttggggatatattggttctgtgatacacaccccaaaagtcatttccattattttctgagtcgcattcgcttcgtggtgttatgcatgcagGTTGATGAGTGGTGGGAACAGCCAGCAGCTACTGTGGTTGACTGGGTCTCTGTTGATGGCCAGAACGTTGGTGCTTGGTTGGCCCTTGTGAAACAACTTC
                                    |  | |  | ||  ||||   |||| |    |   || || |     ||     | || | || |  ||   | |   |||       ||          ||||| |||||||||||||||| ||||||||| | || || |||||||||||  | || ||||| || || ||   ||| |||      | ||||||||| ||||
---------------------------------tcctcaaagttgcttaatttg---atatttcatctggctggtagatttttca-----cgttcctataaaatttctatttctattattaaattgtaacctcttctgcagCTTGATGAGTGGTGGGAGCAGCCAGCATCGACAGTTGTTGACTGGGTAACAGTGGATGGGCAAAATGTAACTGCCTGGCATAATCATGTGAAACAGCTTC

upper sequence: PP1S58_171V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: Vv14s0083g00990.t01 (Vitis vinifera), 3'ss of exon 9
gtaagtgtatgaaatttcctacgttacagttgagaattgaggacgttttttttggggatatattggttctgtgatacacaccccaaaagtcatttccattattttctgagtcgcattcgcttcgtggtgttatgcatgcagGTTGATGAGTGGTGGGAACAGCCAGCAGCTACTGTGGTTGACTGGGTCTCTGTTGATGGCCAGAACGTTGGTGCTTGGTTGGCCCTTGTGAAACAACTTC
                                ||| ||    || ||    ||  |||||  |  ||||| |   |   |         | |||||||||   || | |  |   ||   ||  ||   |||| | ||||| |||||||||||||||| || |||||| | || || |||||||||||  | |||||||| || || |||| |||||||      |  ||||| || || |
-----------------------------actagactt----acattagcattatggatacgt-agttctatttaagttattt---ggtttatttccatttggttttaaacc---ttttatttttgacattatac-tgcagCTTGATGAGTGGTGGGAGCAACCAGCATCAACCGTTGTTGACTGGGTTACAGTTGATGGGCAAAATGTTGCTGCTTGGCATAATCACGTGAAGCAGCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtcatttccattattttctgagtcgcattcgcttcgtggtgttatgcatgcagGTTGATGAGTGGTGGGAACAGCCAGCAGCTACTGTGGTTGACTGGGTCTCTGTTGATGGCCAGAACGTTGGTGCTTGGTTGGCCCTTGTGAAACAACTTC
     atttccattatttt  TA-rich tract