1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagttgaagttcttcgattggcatgtgaagtgcaggcagagacttttatctgtttatgcatgtatttaattttactaaagtatacactctttatgggatattattgagcaataacctaactcatgatttgatttgcgcagGTAAGTGCCTGCAACGAGAGAGCTGTATTAAATCAAATAGAACATTTCTTTGAGCGACGCTTGGCTGGATACAAATCATCCGACACAACAAAG
species | Physcomitrella patens |
transcript | PP1S55_141V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCCCGAAGAGATCGAGACTGTCTCATTCGCTCAGGAGCCTCTTTGTTAC GTAAGTGCCTGCAACGAGAGAGCTGTATTAAATCAAATAGAACATTTCTTTEST: gi|18339917|gb|BJ171945.1|BJ171945
genomic: ATCCCGAAGAGATCGAGACTGTCTCATTCGCTCAGGAGCCTCTTTGTTACgtaagttgaa ... atttgcgcagGTAAGTGCCTGCAACGAGAGAGCTGTATTAAATCAAATAGAACATTTCTTT
EST: ATCCCGAAGAGATCGAGACTGTCTCATTCGCTCAGGAGCCTCTTTGTTAC GTAAGTGCCTGCAACGAGAGAGCTGTATTAAATCAAATAGAACATTTCTTT
genomic: ATCCCGAAGAGATCGAGACTGTCTCATTCGCTCAGGAGCCTCTTTGTTACgtaagttgaa ... atttgcgcagGTAAGTGCCTGCAACGAGAGAGCTGTATTAAATCAAATAGAACATTTCTTT
actctttatgggatattattgagcaataacctaactcatgatttgatttgcgcagGTAAGTGCCTGCAACGAGAGAGCTGTATTAAATCAAATAGAACATTTCTTTGAGCGACGCTTGGCTGGATACAAATCATCCGACACAACAAAG
atattattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgaagttcttcgattggcatgtgaagtgcaggcagagacttttatctgtttatgcatgtatttaattttactaaagtatacactctttatgggatattattgagcaataacctaactcatgatttgatttgcgcagGTAAGTGCCTGCAACGAGAGAGCTGTATTAAATCAAATAGAACATTTCTTTGAGCGACGCTTGGCTGGATACAAATCATCCGACACAACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA