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gtatgtacctttacttatggagttcatctgattaagtcagcatgtgaaactttgtttctgaagcatatgatttcattcttctttgacatgcttatttttagaatttcaccagtagatcttttccttggctaaatttgtagttctttggttttcatttgtaaaaaagtgcatactgtatgcagGTACGCCTGGTAGTGTTGCCGAATCTTGAGCTCTACCTTCGTTTGCTAGCTCCAGAGCTAAGTCCAGAGACCCAGCAGAACGAAATGAAACGTTACGAGG
species | Physcomitrella patens |
transcript | PP1S54_134V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGCTAGCTGCTCTTGGATCACGTGTA GTACGCCTGGTAGTGTTGCCGAATCTTGAGCTCTACCTTCGTTTGCTAGCTEST: gi|37825004|gb|BJ583070.1|BJ583070
genomic: GGCTAGCTGCTCTTGGATCACGTGTAgtatgtacct ... ctgtatgcagGTACGCCTGGTAGTGTTGCCGAATCTTGAGCTCTACCTTCGTTTGCTAGCT
EST: CCCAACACTATGGTGCCATTCGAGGGCTAGCTGCTCTTGGATCACGTGTA GTACGCCTGGTAGTGTTGCCGAATCTTGAGCTCTACCTTCGTTTGCTAGCTEST: gi|67579391|gb|BJ951512.1|BJ951512
genomic: CCCAACACTATGGTGCCATTCGAGGGCTAGCTGCTCTTGGATCACGTGTAgtatgtacct ... ctgtatgcagGTACGCCTGGTAGTGTTGCCGAATCTTGAGCTCTACCTTCGTTTGCTAGCT
EST: CGAGGGCTAGNTGCTCTTGGATCACGTGTA GTACGCCTGGTAGTGTTGCCGAATCTTGAGCTCTACCTTCGTTTGCTAGCTEST: gi|67696877|gb|BJ957110.1|BJ957110
genomic: CGAGGGCTAGCTGCTCTTGGATCACGTGTAgtatgtacct ... ctgtatgcagGTACGCCTGGTAGTGTTGCCGAATCTTGAGCTCTACCTTCGTTTGCTAGCT
EST: CCCAACACTATGGTGCCATTCGAGGGCTAGCTGCTCTTGGATCACGTGTA GTACGCCTGGTAGTGTTGCCGAATCTTGAGCTCTACCTTCGTTTGCTAGCT
genomic: CCCAACACTATGGTGCCATTCGAGGGCTAGCTGCTCTTGGATCACGTGTAgtatgtacct ... ctgtatgcagGTACGCCTGGTAGTGTTGCCGAATCTTGAGCTCTACCTTCGTTTGCTAGCT
gctaaatttgtagttctttggttttcatttgtaaaaaagtgcatactgtatgcagGTACGCCTGGTAGTGTTGCCGAATCTTGAGCTCTACCTTCGTTTGCTAGCTCCAGAGCTAAGTCCAGAGACCCAGCAGAACGAAATGAAACGTTACGAGG
ggctaaa putative branch site (score: 2)
ttttcatttgtaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtacctttacttatggagttcatctgattaagtcagcatgtgaaactttgtttctgaagcatatgatttcattcttctttgacatgcttatttttagaatttcaccagtagatcttttccttggctaaatttgtagttctttggttttcatttgtaaaaaagtgcatactgtatgcagGTACGCCTGGTAGTGTTGCCGAATCTTGAGCTCTACCTTCGTTTGCTAGCTCCAGAGCTAAGTCCAGAGACCCAGCAGAACGAAATGAAACGTTACGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT