1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagaaataatccttaccatttctcaatttcctcctttgtgttctaacctgtgggaatagcagcaaatgcatttgcggagtggttggtcgtgtattagaacatgaagcaattctagttgtagagcttacatagattcatttagtagctaataggagtcttggcttcgaagtgagcagGTGGGTGGACGACAGGAAAGGATGGAGTTTGCCGAATCTTTTTTCACTTGCTACAATTTTCGCCTCATGTACACGTCAGGCACCCAGTACCCAATTGTCG
species | Physcomitrella patens |
transcript | PP1S49_285V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATATTCCAGCCTCTGGTGGAATTATGCAA GTGGGTGGACGACAGGAAAGGATGGAGTTTGCCGAATCTTTTTTCACTTGCEST: gi|162215240|gb|FC390813.1|FC390813
genomic: GATATTCCAGCCTCTGGTGGAATTATGCAAgtgagaaata ... aagtgagcagGTGGGTGGACGACAGGAAAGGATGGAGTTTGCCGAATCTTTTTTCACTTGC
EST: GATATTCCAGCCTCTGGTGGAATTATGCAA GTGGGTGGACGACAGGAAAGGATGGAGTTT
genomic: GATATTCCAGCCTCTGGTGGAATTATGCAAgtgagaaata ... aagtgagcagGTGGGTGGACGACAGGAAAGGATGGAGTTT
agcttacatagattcatttagtagctaataggagtcttggcttcgaagtgagcagGTGGGTGGACGACAGGAAAGGATGGAGTTTGCCGAATCTTTTTTCACTTGCTACAATTTTCGCCTCATGTACACGTCAGGCACCCAGTACCCAATTGTCG
agctaat putative branch site (score: 14)
attcattta TA-rich tract