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...ttttggggggtgggggcttgcactctcattttcttgtggtgcaccgctgcattacgtttgtaatcatatatgaagtattatttgttggttgcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCCCTTACATTGCGCCTTCCCTTGGTGGAGTAGAAAGTCTGGTTGAACAAC
species | Physcomitrella patens |
transcript | PP1S49_246V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAG ATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCEST: gi|162159188|gb|FC334359.1|FC334359
genomic: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAGgtatttgtac ... gcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
EST: AGATTGCGAAGCGACAGATGACTGGCTTNGGCGGTGTCATTAGTTTTGAG ATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCEST: gi|162198912|gb|FC372939.1|FC372939
genomic: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAGgtatttgtac ... gcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
EST: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAG ATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCEST: gi|162198913|gb|FC372940.1|FC372940
genomic: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAGgtatttgtac ... gcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
EST: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAG ATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCEST: gi|162164565|gb|FC341860.1|FC341860
genomic: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAGgtatttgtac ... gcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
EST: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAG ATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCEST: gi|162165089|gb|FC341630.1|FC341630
genomic: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAGgtatttgtac ... gcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
EST: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAG ATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCEST: gi|37830730|gb|BJ588742.1|BJ588742
genomic: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAGgtatttgtac ... gcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
EST: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAG ATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCEST: gi|162156222|gb|FC332597.1|FC332597
genomic: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAGgtatttgtac ... gcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
EST: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAG ATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCEST: gi|162156221|gb|FC332596.1|FC332596
genomic: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAGgtatttgtac ... gcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
EST: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAG ATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCEST: gi|37832348|gb|BJ590360.1|BJ590360
genomic: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAGgtatttgtac ... gcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
EST: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAG ATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCEST: gi|37848198|gb|BJ606206.1|BJ606206
genomic: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAGgtatttgtac ... gcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
EST: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAG ATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCEST: gi|37851303|gb|BJ609311.1|BJ609311
genomic: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAGgtatttgtac ... gcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
EST: AGATTGCGAAGCGACAGATGACTGGCTTNGGCGGTGTCATTAGTTTTGAG ATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCEST: gi|67701447|gb|BJ961680.1|BJ961680
genomic: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAGgtatttgtac ... gcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
EST: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAG ATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
genomic: AGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAGgtatttgtac ... gcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATC
gctgcattacgtttgtaatcatatatgaagtattatttgttggttgcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCCCTTACATTGCGCCTTCCCTTGGTGGAGTAGAAAGTCTGGTTGAACAAC
tttgtaatcatatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttggggggtgggggcttgcactctcattttcttgtggtgcaccgctgcattacgtttgtaatcatatatgaagtattatttgttggttgcggctacagATAGATGGAGATCTGGAAACAACATCAAAATTTATTGATGGCCTCAGAATCCCTTACATTGCGCCTTCCCTTGGTGGAGTAGAAAGTCTGGTTGAACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - tggtgca
- - - - - - - - - - - - - - - - - - - - - - cgctgca