1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aatcgtcgtttgcagggcgggaaggtcggaggtccgcatcacagcatcaacataggccacgagctctgatacaaggatggtgcttatgttgtgagcgcagGCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATAAGACCTATTTCACGAGTGCATTCTCTGGGTACACAGTAGGCCTTCTAGT
species | Physcomitrella patens |
transcript | PP1S47_4V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTACCCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAG GCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATAEST: gi|162242980|gb|FC417620.1|FC417620
genomic: TGTTACCCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAGgtgctcactc ... gtgagcgcagGCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATA
EST: TGTTACCCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAG GCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATAEST: gi|37833593|gb|BJ591605.1|BJ591605
genomic: TGTTACCCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAGgtgctcactc ... gtgagcgcagGCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATA
EST: TGTTACCCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAG GCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATAEST: gi|162241570|gb|FC414692.1|FC414692
genomic: TGTTACCCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAGgtgctcactc ... gtgagcgcagGCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATA
EST: TGTTACCCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAG GCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATAEST: gi|208358879|gb|DC957651.1|DC957651
genomic: TGTTACCCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAGgtgctcactc ... gtgagcgcagGCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATA
EST: TGTTACTCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAG GCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATAEST: gi|162241571|gb|FC414693.1|FC414693
genomic: TGTTACCCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAGgtgctcactc ... gtgagcgcagGCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATA
EST: TGTTACCCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAG GCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATAEST: gi|162248337|gb|FC422552.1|FC422552
genomic: TGTTACCCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAGgtgctcactc ... gtgagcgcagGCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATA
EST: TGTTACCCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAG GCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATA
genomic: TGTTACCCGGCCTTTCTCTATGCTGGGACTAGGGGACATTGTAATTCCAGgtgctcactc ... gtgagcgcagGCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATA
atcaacataggccacgagctctgatacaaggatggtgcttatgttgtgagcgcagGCATTTTTGTAGCTTTGGCGTTGCGCTTTGATATGTCGAGGGGTCGGGATAAGACCTATTTCACGAGTGCATTCTCTGGGTACACAGTAGGCCTTCTAGT
ctctgat putative branch site (score: 4)
ttatgtt TA-rich tract