1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gagaaaaaaatgtttcctcctttatttctgcacatttttaacagctatctcctgattttacttccagtggcttacaaggaaatattgtaactgtgcctagGATGCTTTGAGTGCATATGCTTTGGTGTTTGATGCTGTCTACACGCCAAAACAGACGCAGCTCTTGAAAGATGCAGCAGAGATGGGGGCTGTAACTGTAA
species | Physcomitrella patens |
transcript | PP1S47_18V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTACCTCTATTGGGATGGAGCCTGAAGTCACTAGGTCCCCGATTCACAAG GATGCTTTGAGTGCATATGCTTTGGTGTTTGATGCTGTCTACACGCCAAAAEST: gi|162209035|gb|FC385587.1|FC385587
genomic: GTACCTCTATTGGGATGGAGCCTGAAGTCACTAGGTCCCCGATTCACAAGgttggtttct ... ctgtgcctagGATGCTTTGAGTGCATATGCTTTGGTGTTTGATGCTGTCTACACGCCAAAA
EST: GTACCTTTATTGGGATGGAGCCTGAAGTCACTAGGTCCCCGATTCACAAG GATGCTTTGAGTGCATATGCTTTGGTGTTTGATGCGGTTTACACGCCAAAAEST: gi|162196537|gb|FC375451.1|FC375451
genomic: GTACCTCTATTGGGATGGAGCCTGAAGTCACTAGGTCCCCGATTCACAAGgttggtttct ... ctgtgcctagGATGCTTTGAGTGCATATGCTTTGGTGTTTGATGCTGTCTACACGCCAAAA
EST: GTACCTCTATTGGGATGGAGCCTGAAGTCACTAGGTCCCCGATTCACAAG GATGCTTTGAGTGCATATGCTTTGGTGTTTGATGCTGTCTACACGCCAAAAEST: gi|162229411|gb|FC405602.1|FC405602
genomic: GTACCTCTATTGGGATGGAGCCTGAAGTCACTAGGTCCCCGATTCACAAGgttggtttct ... ctgtgcctagGATGCTTTGAGTGCATATGCTTTGGTGTTTGATGCTGTCTACACGCCAAAA
EST: GTACCTCTATTGGGATGGAGCCTGAAGTCACTAGGTCCCCGATTCACAAG GATGCTTTGAGTGCATATGCTTTGGTGTTTGATGCTGTCTACACGCCAAAAEST: gi|162209036|gb|FC385588.1|FC385588
genomic: GTACCTCTATTGGGATGGAGCCTGAAGTCACTAGGTCCCCGATTCACAAGgttggtttct ... ctgtgcctagGATGCTTTGAGTGCATATGCTTTGGTGTTTGATGCTGTCTACACGCCAAAA
EST: GTACCTCTATTGGGATGGAGCCTGAAGTCACTAGGTCCCCGATTCACAAG GATGCTTTGAGTGCATATGCTTTGGTGTTTGATGCTGTCTACACGCCAAAA
genomic: GTACCTCTATTGGGATGGAGCCTGAAGTCACTAGGTCCCCGATTCACAAGgttggtttct ... ctgtgcctagGATGCTTTGAGTGCATATGCTTTGGTGTTTGATGCTGTCTACACGCCAAAA
tatctcctgattttacttccagtggcttacaaggaaatattgtaactgtgcctagGATGCTTTGAGTGCATATGCTTTGGTGTTTGATGCTGTCTACACGCCAAAACAGACGCAGCTCTTGAAAGATGCAGCAGAGATGGGGGCTGTAACTGTAA
ttgtaac putative branch site (score: 10)
aaatattgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaaaaaaatgtttcctcctttatttctgcacatttttaacagctatctcctgattttacttccagtggcttacaaggaaatattgtaactgtgcctagGATGCTTTGAGTGCATATGCTTTGGTGTTTGATGCTGTCTACACGCCAAAACAGACGCAGCTCTTGAAAGATGCAGCAGAGATGGGGGCTGTAACTGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - -ttctgca