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gtaatttactttgccacagcaggctttagcatgacaaggcgttcattgctagtttattatacacgattagattgccaattttttaatcatctgtgttgtgtaatgcttcggctaccgaagtttcgggtctttagggcacaaatcatttcatcaacttggagcattgtattttgcagGATTTTCTGGAAGGAAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAG
species | Physcomitrella patens |
transcript | PP1S479_14V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAG GATTTTCTGGAAEST: gi|67725923|gb|BJ976182.1|BJ976182
genomic: TTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAGgtaatttact ... tattttgcagGATTTTCTGGAA
EST: TTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAG GATTTTCTGGAAGGAAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTGEST: gi|208346034|gb|DC921279.1|DC921279
genomic: TTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAGgtaatttact ... tattttgcagGATTTTCTGGAAGGAAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTG
EST: AACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAG GATTTTCTGGAAGGAAAGCTATCCGTTCTGCCTGGAGAGAGGCCTACACTGEST: gi|162182551|gb|FC357526.1|FC357526
genomic: AACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAGgtaatttact ... tattttgcagGATTTTCTGGAAGGAAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTG
EST: TTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAG GATTTTCTGGAAGGCAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTGEST: gi|67725390|gb|BJ975649.1|BJ975649
genomic: TTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAGgtaatttact ... tattttgcagGATTTTCTGGAAGGAAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTG
EST: TTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAG GATTTTCTGGAAGGAAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTGEST: gi|37840845|gb|BJ598853.1|BJ598853
genomic: TTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAGgtaatttact ... tattttgcagGATTTTCTGGAAGGAAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTG
EST: TTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAG GATTTTCTGGAAGGAAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTGEST: gi|162239290|gb|FC415389.1|FC415389
genomic: TTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAGgtaatttact ... tattttgcagGATTTTCTGGAAGGAAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTG
EST: TTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAG GATTTTCTGGAAGGCAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTG
genomic: TTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAGgtaatttact ... tattttgcagGATTTTCTGGAAGGAAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTG
ttcgggtctttagggcacaaatcatttcatcaacttggagcattgtattttgcagGATTTTCTGGAAGGAAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAG
attgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttactttgccacagcaggctttagcatgacaaggcgttcattgctagtttattatacacgattagattgccaattttttaatcatctgtgttgtgtaatgcttcggctaccgaagtttcgggtctttagggcacaaatcatttcatcaacttggagcattgtattttgcagGATTTTCTGGAAGGAAAGCTATCTGTTCTGCCTGGAGAGAGGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA