1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aattgtggagtgaagctgttgaatggtccaagtctgagaggtctattcagatatttgacaattcaggacgttgctgactgtaatcaactgttatgtctagCTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTGGTTGGCGTTGCAACCACGCGCAAAGCTTCAAAATGGGGAATTTTACTTC
species | Physcomitrella patens |
transcript | PP1S46_64V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTTGATACTGGGGGCTNGAAGAAAAGCATGCCCGACTTCCACTCAAC CTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTGEST: gi|162216669|gb|FC392735.1|FC392735
genomic: GTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAACgtatgtcaat ... ttatgtctagCTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTG
EST: GGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAAC CTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTGEST: gi|37835513|gb|BJ593525.1|BJ593525
genomic: GGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAACgtatgtcaat ... ttatgtctagCTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTG
EST: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAAC CTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTGEST: gi|208371442|gb|DC955778.1|DC955778
genomic: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAACgtatgtcaat ... ttatgtctagCTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTG
EST: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAAC CTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTGEST: gi|162159314|gb|FC334621.1|FC334621
genomic: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAACgtatgtcaat ... ttatgtctagCTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTG
EST: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAAC CTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTGEST: gi|208395871|gb|DC920321.1|DC920321
genomic: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAACgtatgtcaat ... ttatgtctagCTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTG
EST: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAAC CTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTGEST: gi|208366470|gb|DC955574.1|DC955574
genomic: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAACgtatgtcaat ... ttatgtctagCTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTG
EST: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAAC CTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTGEST: gi|37841315|gb|BJ599323.1|BJ599323
genomic: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAACgtatgtcaat ... ttatgtctagCTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTG
EST: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAAC CTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTGEST: gi|162159315|gb|FC334622.1|FC334622
genomic: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAACgtatgtcaat ... ttatgtctagCTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTG
EST: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAAC CTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTG
genomic: TGGGTTGATACTGGGGGCTTGAAGAAAAGCATGCCCGACTTCCACTCAACgtatgtcaat ... ttatgtctagCTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTG
ttcagatatttgacaattcaggacgttgctgactgtaatcaactgttatgtctagCTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTGGTTGGCGTTGCAACCACGCGCAAAGCTTCAAAATGGGGAATTTTACTTC
tgctgac putative branch site (score: 10)
atatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgtggagtgaagctgttgaatggtccaagtctgagaggtctattcagatatttgacaattcaggacgttgctgactgtaatcaactgttatgtctagCTTTCAAAAATCACTGAGGTTCTTAAATGAAGGAGCAGATACAATTACTTGGTTGGCGTTGCAACCACGCGCAAAGCTTCAAAATGGGGAATTTTACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - tgttgaa