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gtaagttccaagtacaatctcttgtccggtattatgtcagtactagccaggattcaccaaaaggaatataattgcaattcatggggttttttacgaggtccttacctatgtggtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG
species | Physcomitrella patens |
transcript | PP1S450_21V6.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|162234870|gb|FC410643.1|FC410643
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCNATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCEST: gi|162218487|gb|FC395064.1|FC395064
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGC
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|208353431|gb|DC918487.1|DC918487
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|162234869|gb|FC410642.1|FC410642
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|37828958|gb|BJ586970.1|BJ586970
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GAATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|162185929|gb|FC361029.1|FC361029
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|37852710|gb|BJ610718.1|BJ610718
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|162268622|gb|FC443676.1|FC443676
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|162232564|gb|FC408400.1|FC408400
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|162184165|gb|FC359639.1|FC359639
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|162176322|gb|FC353507.1|FC353507
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTTTGATCGAGACAAGGTTEST: gi|208397366|gb|DC916320.1|DC916320
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|37827165|gb|BJ585177.1|BJ585177
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|37822149|gb|BJ580215.1|BJ580215
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAGGGTTEST: gi|208380828|gb|DC923310.1|DC923310
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|67727441|gb|BJ977700.1|BJ977700
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|162265940|gb|FC442943.1|FC442943
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|208388243|gb|DC945575.1|DC945575
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|162232563|gb|FC408399.1|FC408399
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|37821562|gb|BJ579628.1|BJ579628
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTEST: gi|162227004|gb|FC403361.1|FC403361
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
EST: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGAC GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
genomic: CCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttcca ... gtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTT
ataattgcaattcatggggttttttacgaggtccttacctatgtggtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG
tccttac putative branch site (score: 7)
tttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttccaagtacaatctcttgtccggtattatgtcagtactagccaggattcaccaaaaggaatataattgcaattcatggggttttttacgaggtccttacctatgtggtgttatcagGTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG