1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagttaacttatggatagctttttcaaggttggaacacatctgtatacgcacagttacgattttgttttaaatcttaagagaagaatagaactaaaagtgtgtgtcatcaccgggctgttctatgtatttatagttgctctcagaggagttgacgttgaattaatgcttgtttttcactctttcagGTGAACAGGGATCTTCTAGATCTGGAGACAGCTCTTGTAGGAGCAACCTCTG
species | Physcomitrella patens |
transcript | PP1S450_16V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTATCCAGTTTTGCATTTACGAGCAGCTTAGATTGGGCTTGAAGAAAGTG GTGAACAGGGATCTTCTAGATCTGGAGACAGCTCTTGTAGGAGCAACCTCTEST: gi|162207066|gb|FC382180.1|FC382180
genomic: CTATCCAGTTTTGCATTTACGAGCAGCTTAGATTGGGCTTGAAGAAAGTGgtaagttaac ... actctttcagGTGAACAGGGATCTTCTAGATCTGGAGACAGCTCTTGTAGGAGCAACCTCT
EST: CTATCCAGTTTTGCATTTACGAGCAGCTTAGATTGGGCTTGAAGAAAGTG GTGAACAGGGATCTTCTAGATCTGGAGACAGCTCTTGTAGGAGCAACCTCTEST: gi|162187904|gb|FC364478.1|FC364478
genomic: CTATCCAGTTTTGCATTTACGAGCAGCTTAGATTGGGCTTGAAGAAAGTGgtaagttaac ... actctttcagGTGAACAGGGATCTTCTAGATCTGGAGACAGCTCTTGTAGGAGCAACCTCT
EST: CTATCCAGTTTTGCATTTACGAGCAGCTTAGATTGGGCTTGAAGAAAGTG GTGAACAGGGATCTTCTAGATCTGGAGACAGCTCTTGTAGGAGCAACCTCTEST: gi|162187903|gb|FC364477.1|FC364477
genomic: CTATCCAGTTTTGCATTTACGAGCAGCTTAGATTGGGCTTGAAGAAAGTGgtaagttaac ... actctttcagGTGAACAGGGATCTTCTAGATCTGGAGACAGCTCTTGTAGGAGCAACCTCT
EST: CTATCCAGTTTTGCATTTACGAGCAGCTTAGATTGGGCTTGAAGAAAGTG GTGAACAGGGATCTTCTAGATCTGGAGACAGCTCTTGTAGGAGCAACCTCTEST: gi|67726554|gb|BJ976813.1|BJ976813
genomic: CTATCCAGTTTTGCATTTACGAGCAGCTTAGATTGGGCTTGAAGAAAGTGgtaagttaac ... actctttcagGTGAACAGGGATCTTCTAGATCTGGAGACAGCTCTTGTAGGAGCAACCTCT
EST: CTATCCAGTTTTGCATTTACGAGCAGCTTAGATTGGGCTTGAAGAAAGTG GTGAACAGGGATCTTCTAGATCTGGAGACAGCTCTTGTAGGAGCAACCTCT
genomic: CTATCCAGTTTTGCATTTACGAGCAGCTTAGATTGGGCTTGAAGAAAGTGgtaagttaac ... actctttcagGTGAACAGGGATCTTCTAGATCTGGAGACAGCTCTTGTAGGAGCAACCTCT
tagttgctctcagaggagttgacgttgaattaatgcttgtttttcactctttcagGTGAACAGGGATCTTCTAGATCTGGAGACAGCTCTTGTAGGAGCAACCTCTG
aattaat putative branch site (score: 14)
cttgtttttcactctt CT-rich tract
ttgaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttaacttatggatagctttttcaaggttggaacacatctgtatacgcacagttacgattttgttttaaatcttaagagaagaatagaactaaaagtgtgtgtcatcaccgggctgttctatgtatttatagttgctctcagaggagttgacgttgaattaatgcttgtttttcactctttcagGTGAACAGGGATCTTCTAGATCTGGAGACAGCTCTTGTAGGAGCAACCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA