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gtatgcacttgttacccctgagtcttaagtgaacgttttcacagaagctttttactgttgcttgaagtattcaatatacaagctcgtatttatttgtgattatttgatgcagGAAAAGTTGCATCTTGAGAATTTGAAAGCAAGTAATCGCGTGCTGAGTTACATCAGACATGAGTGGAAAGAAGCTTCTCAACGCCTTGCACCATTCATGA
species | Physcomitrella patens |
transcript | PP1S42_185V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTAACTTCATCTGGTGCTTGTCACAAAACAGTGACTGTTACCAACAATGG GAAAAGTTGCATCTTGAGAATTTGAAAGCAAGTAATCGCGTGCTGAGTTACEST: gi|162153817|gb|FC329948.1|FC329948
genomic: GTAACTTCATCTGGTGCTTGTCACAAAACAGTGACTGTTACCAACAATGGgtatgcactt ... tttgatgcagGAAAAGTTGCATCTTGAGAATTTGAAAGCAAGTAATCGCGTGCTGAGTTAC
EST: GTAACTTCATCTGGTGCTTGTCACAAAACAGTGACTGTTACCAACAATGG GAAAAGTTGCATCTTGAGAATTTGAAAGCAAGTAATCGCGTGCTGAGTTACEST: gi|208364795|gb|DC954497.1|DC954497
genomic: GTAACTTCATCTGGTGCTTGTCACAAAACAGTGACTGTTACCAACAATGGgtatgcactt ... tttgatgcagGAAAAGTTGCATCTTGAGAATTTGAAAGCAAGTAATCGCGTGCTGAGTTAC
EST: GTAACTTCATCTGGTGCTTGTCACAAAACAGTGACTGTTACCAACAATGG GAAAAGTTGCATCTTGAGAATTTGAAAGCAAGTAATCGCGTGCTGAGTTACEST: gi|37835031|gb|BJ593043.1|BJ593043
genomic: GTAACTTCATCTGGTGCTTGTCACAAAACAGTGACTGTTACCAACAATGGgtatgcactt ... tttgatgcagGAAAAGTTGCATCTTGAGAATTTGAAAGCAAGTAATCGCGTGCTGAGTTAC
EST: GTAACTTCATCTGGTGCTTGTCACAAAACAGTGACTGTTACCAACAATGG GAAAAGTTGCATCTTGAGAATTTGAAAGCAAGTAATCGCGTGCTGAGTTACEST: gi|162165905|gb|FC340956.1|FC340956
genomic: GTAACTTCATCTGGTGCTTGTCACAAAACAGTGACTGTTACCAACAATGGgtatgcactt ... tttgatgcagGAAAAGTTGCATCTTGAGAATTTGAAAGCAAGTAATCGCGTGCTGAGTTAC
EST: GTAACTTCATCTGGTGCTTGTCACAAAACAGTGACTGTTACCAACAATGG GAAAAGTTGCATCTTGAGAATTTGAAAGCAAGTAATCGCGTGCTGAGTTAC
genomic: GTAACTTCATCTGGTGCTTGTCACAAAACAGTGACTGTTACCAACAATGGgtatgcactt ... tttgatgcagGAAAAGTTGCATCTTGAGAATTTGAAAGCAAGTAATCGCGTGCTGAGTTAC
ttgcttgaagtattcaatatacaagctcgtatttatttgtgattatttgatgcagGAAAAGTTGCATCTTGAGAATTTGAAAGCAAGTAATCGCGTGCTGAGTTACATCAGACATGAGTGGAAAGAAGCTTCTCAACGCCTTGCACCATTCATGA
atttgat putative branch site (score: 5)
tatttatttgtgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcacttgttacccctgagtcttaagtgaacgttttcacagaagctttttactgttgcttgaagtattcaatatacaagctcgtatttatttgtgattatttgatgcagGAAAAGTTGCATCTTGAGAATTTGAAAGCAAGTAATCGCGTGCTGAGTTACATCAGACATGAGTGGAAAGAAGCTTCTCAACGCCTTGCACCATTCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC