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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaagaaacaagcccataaacatatagttacgttcagtggtaaagcaatttttcttctaatgtgatgaagtcttctgagttgtgttttttcgtccttcagCTGTGGGATGTGAACATGGAATCTGCTCCTGTGGCTACATTTAAAGTTCACGAGCATTTGCGACCAAAG

Basic information

species Physcomitrella patens
transcript PP1S425_2V6.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162255329|gb|FC432055.1|FC432055
EST:     TTGCAAGAGGTGATCGGTATATTCTCAGTCGGGACTACATGAGTCTGAAG                         CTGTGGGATGTGAACATGGAATCTGCTCCTGTGGCTACATTTAAAGTTCAC
genomic: TTGCAAGAGGTGATCGGTATATTCTCAGTCGGGACTACATGAGTCTGAAGgttagttata ... cgtccttcagCTGTGGGATGTGAACATGGAATCTGCTCCTGTGGCTACATTTAAAGTTCAC
EST: gi|162150294|gb|FC326379.1|FC326379
EST:     TTGCAAGAGGTGATCGGTATATTCTCAGTCGGGACTACATGAGTCTGAAG                         CTGTGGGATGTGAACATGGAATCTGCTCCTGTGGCTACATTTAAAGTTCAC
genomic: TTGCAAGAGGTGATCGGTATATTCTCAGTCGGGACTACATGAGTCTGAAGgttagttata ... cgtccttcagCTGTGGGATGTGAACATGGAATCTGCTCCTGTGGCTACATTTAAAGTTCAC
EST: gi|162258030|gb|FC434124.1|FC434124
EST:     TTGCAAGAGGTGATCGGTATATTCTCAGTCGGGACTACATGAGTCTGAAG                         CTGTGGGATGTGAACATGGAATCTGCTCCTGTGGCTACATTTAAAGTTCAC
genomic: TTGCAAGAGGTGATCGGTATATTCTCAGTCGGGACTACATGAGTCTGAAGgttagttata ... cgtccttcagCTGTGGGATGTGAACATGGAATCTGCTCCTGTGGCTACATTTAAAGTTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatttttcttctaatgtgatgaagtcttctgagttgtgttttttcgtccttcagCTGTGGGATGTGAACATGGAATCTGCTCCTGTGGCTACATTTAAAGTTCACGAGCATTTGCGACCAAAG
         ttctaat  putative branch site (score: 2)
                                     tgttttttcgtccttc  putative PPT
                                     tgtttttt  TA-rich tract