1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gccagacagcatgcagcatatgaggctctagtttgcattaaagcattcattttctctaggttttcaagtgttgcgtctaaccttgttgttttgctgctagATTTCATTTTGAACTGTCGTTTTCAAAGGACAACTTACATGGCGTCTTGTACGAGCCTTGGCATTGGCGATTTGTCGGGGATGACCATAGCCTTCATACC
species | Physcomitrella patens |
transcript | PP1S41_163V6.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGTTTGATGAGGGAGCAGCATACAGATGGCTGGAACAAAACGGTGCTAG ATTTCATTTTGAACTGTCGTTTTCAAAGGACAACTTACATGGCGTCTTGTAEST: gi|37852321|gb|BJ610329.1|BJ610329
genomic: AGTTTGATGAGGGAGCAGCATACAGATGGCTGGAACAAAACGGTGCTAGgtaattgtat ... ttgctgctagATTTCATTTTGAACTGTCGTTTTCAAAGGACAACTTACATGGCGTCTTGTA
EST: AGTTTGATGAGGGAGCAGCATACAGATGGCTGGAACAAAACGGTGCTAG ATTTCATTTTGAACTGTCGTTTTCAAAGGACAACTTACATGGCGTCTTGTA
genomic: AGTTTGATGAGGGAGCAGCATACAGATGGCTGGAACAAAACGGTGCTAGgtaattgtat ... ttgctgctagATTTCATTTTGAACTGTCGTTTTCAAAGGACAACTTACATGGCGTCTTGTA
ttcattttctctaggttttcaagtgttgcgtctaaccttgttgttttgctgctagATTTCATTTTGAACTGTCGTTTTCAAAGGACAACTTACATGGCGTCTTGTACGAGCCTTGGCATTGGCGATTTGTCGGGGATGACCATAGCCTTCATACC
gtctaac putative branch site (score: 2)
ttgtttt putative PPT
ttttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccagacagcatgcagcatatgaggctctagtttgcattaaagcattcattttctctaggttttcaagtgttgcgtctaaccttgttgttttgctgctagATTTCATTTTGAACTGTCGTTTTCAAAGGACAACTTACATGGCGTCTTGTACGAGCCTTGGCATTGGCGATTTGTCGGGGATGACCATAGCCTTCATACC
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