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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccagacagcatgcagcatatgaggctctagtttgcattaaagcattcattttctctaggttttcaagtgttgcgtctaaccttgttgttttgctgctagATTTCATTTTGAACTGTCGTTTTCAAAGGACAACTTACATGGCGTCTTGTACGAGCCTTGGCATTGGCGATTTGTCGGGGATGACCATAGCCTTCATACC

Basic information

species Physcomitrella patens
transcript PP1S41_163V6.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208351989|gb|DC925798.1|DC925798
EST:     AGTTTGATGAGGGAGCAGCATACAGATGGCTGGAACAAAACGGTGCTAG                         ATTTCATTTTGAACTGTCGTTTTCAAAGGACAACTTACATGGCGTCTTGTA
genomic: AGTTTGATGAGGGAGCAGCATACAGATGGCTGGAACAAAACGGTGCTAGgtaattgtat ... ttgctgctagATTTCATTTTGAACTGTCGTTTTCAAAGGACAACTTACATGGCGTCTTGTA
EST: gi|37852321|gb|BJ610329.1|BJ610329
EST:     AGTTTGATGAGGGAGCAGCATACAGATGGCTGGAACAAAACGGTGCTAG                         ATTTCATTTTGAACTGTCGTTTTCAAAGGACAACTTACATGGCGTCTTGTA
genomic: AGTTTGATGAGGGAGCAGCATACAGATGGCTGGAACAAAACGGTGCTAGgtaattgtat ... ttgctgctagATTTCATTTTGAACTGTCGTTTTCAAAGGACAACTTACATGGCGTCTTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattttctctaggttttcaagtgttgcgtctaaccttgttgttttgctgctagATTTCATTTTGAACTGTCGTTTTCAAAGGACAACTTACATGGCGTCTTGTACGAGCCTTGGCATTGGCGATTTGTCGGGGATGACCATAGCCTTCATACC
                             gtctaac  putative branch site (score: 2)
                                        ttgtttt  putative PPT
               ttttcaa  TA-rich tract