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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctccatgttgatacacctttatttctttacaatatcttctgcatggactacatgttatatgtcacggctcttaaaatgctagttgcttaagtcagaataatacttgcttgattgatgatactggtacttacgttctggcatgacgagcgtcctgctcctttttttcagGATGAATTTTCTGAGCAACATATTAAGAGAGGAAGGAGGGTTTGATTACAAAAAAGCGATTGTTGACTCCATACTTATCCTCATTCGTGAGATTCCTGAC

Basic information

species Physcomitrella patens
transcript PP1S41_154V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162210688|gb|FC386584.1|FC386584
EST:     GAGGCCATCCGCTCTTTGTGTCTCAAGTTCCCTCAAAAATATCGCTCATT                         GATGAATTTTCTGAGCAACATATTAAGAGAGGAAGGAGGGTTTGATTACAA
genomic: GAGGCCATCCGCTCTTTGTGTCTCAAGTTCCCTCAAAAATATCGCTCATTgtgagctcca ... tttttttcagGATGAATTTTCTGAGCAACATATTAAGAGAGGAAGGAGGGTTTGATTACAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgatactggtacttacgttctggcatgacgagcgtcctgctcctttttttcagGATGAATTTTCTGAGCAACATATTAAGAGAGGAAGGAGGGTTTGATTACAAAAAAGCGATTGTTGACTCCATACTTATCCTCATTCGTGAGATTCCTGAC
           tacttac  putative branch site (score: 1)
                                  cgtcctgctccttttt  putative PPT
                                             tttttttca  TA-rich tract