1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatcatctcaccttaatatttttttcacaaaaaacttaatcgacttctaaaaattgacacccttggtcaaaattagaaaaacgctcgatgtttgggtcacttttctgaaggcattcagaatgtagGGTTTACAAGAAGGTTTCAGCCGCACAAGGTCGTCACAATTGGGCAAGCAGCGATTGCTCTGGCATGTGGGGACACCACTGAAAGATATGGTGAGGAGTT
species | Physcomitrella patens |
transcript | PP1S419_36V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGTGATGATCTCGACTCCGGGGAGAACAGCATCATAACGTCTGCATTTG GGTTTACAAGAAGGTTTCAGCCGCACAAGGTCGTCACAATTGGGCAAGCAGEST: gi|162212215|gb|FC388325.1|FC388325
genomic: AAGTGATGATCTCGACTCCGGGGAGAACAGCATCATAACGTCTGCATTTGgtaatcatct ... cagaatgtagGGTTTACAAGAAGGTTTCAGCCGCACAAGGTCGTCACAATTGGGCAAGCAG
EST: AAGTGATGATCTCGACTCCGGGGAGAACAGCATCATAACGTCTGCATTTG GGTTTACAAGAAGGTTTCAGCCGCACAAGGTCGTCACAATTGGG
genomic: AAGTGATGATCTCGACTCCGGGGAGAACAGCATCATAACGTCTGCATTTGgtaatcatct ... cagaatgtagGGTTTACAAGAAGGTTTCAGCCGCACAAGGTCGTCACAATTGGG
aattagaaaaacgctcgatgtttgggtcacttttctgaaggcattcagaatgtagGGTTTACAAGAAGGTTTCAGCCGCACAAGGTCGTCACAATTGGGCAAGCAGCGATTGCTCTGGCATGTGGGGACACCACTGAAAGATATGGTGAGGAGTT
aaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcatctcaccttaatatttttttcacaaaaaacttaatcgacttctaaaaattgacacccttggtcaaaattagaaaaacgctcgatgtttgggtcacttttctgaaggcattcagaatgtagGGTTTACAAGAAGGTTTCAGCCGCACAAGGTCGTCACAATTGGGCAAGCAGCGATTGCTCTGGCATGTGGGGACACCACTGAAAGATATGGTGAGGAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG