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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctatctcatgcgatttgaacatgagtggtgcctttgattgtagaaattttacaagcccatggcaatctggaggttgcaagctcaatcgtggtcattaagtgttcactctgatcgtagtggactgtactatgattctgatttactattactaatgattgaaacatgatgtacgtttggcagCTTTAATAGGAGCAGAGAGTGGTGCAGTTGCAGAATTGAAACAACTCTTCGCCTTGGCAGAGGGTTATGGTATCCAGGATTGGCTAAGGTTTGATGCCTC

Basic information

species Physcomitrella patens
transcript PP1S407_7V6.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67724906|gb|BJ975165.1|BJ975165
EST:     TGAGGGAATCTTGCAAGCTCTCACTCTTCAATCTTTTGATGATCTTGAAG                         CTTTAATAGGAGCAGAGAGTGGTGCAGTTGCAGAATTGAAACAACTCTTCG
genomic: TGAGGGAATCTTGCAAGCTCTCACTCTTCAATCTTTTGATGATCTTGAAGgtaatctatc ... cgtttggcagCTTTAATAGGAGCAGAGAGTGGTGCAGTTGCAGAATTGAAACAACTCTTCG
EST: gi|162184196|gb|FC360463.1|FC360463
EST:     TGAGGGAATCTTGCAAGCTCTCACTCTTCAATCTTTTGATGATCTTGAAG                         CTTTAATAGGAGCAGAGAGTGGTGCAGTTGCAGAATTGAAACAACTCTTCG
genomic: TGAGGGAATCTTGCAAGCTCTCACTCTTCAATCTTTTGATGATCTTGAAGgtaatctatc ... cgtttggcagCTTTAATAGGAGCAGAGAGTGGTGCAGTTGCAGAATTGAAACAACTCTTCG
EST: gi|208379607|gb|DC927104.1|DC927104
EST:     TGAGGGAATCTTGCAAGCTCTCACTCTTCAATCTTTTGATGATCTTGAAG                         CTTTAATAGGAGCAGAGAGTGGTGCAGTTGCAGAATTGAAACAACTCTTCG
genomic: TGAGGGAATCTTGCAAGCTCTCACTCTTCAATCTTTTGATGATCTTGAAGgtaatctatc ... cgtttggcagCTTTAATAGGAGCAGAGAGTGGTGCAGTTGCAGAATTGAAACAACTCTTCG
EST: gi|67726712|gb|BJ976971.1|BJ976971
EST:     TGAGGGAATCTTGCAAGCTCTCACTCTTCAATCTTTTGATGATCTTGAAG                         CTTTAATAGGAGCAGAGAGTGGTGCAGTTGCAGAATTGAAACAACTCTTCG
genomic: TGAGGGAATCTTGCAAGCTCTCACTCTTCAATCTTTTGATGATCTTGAAGgtaatctatc ... cgtttggcagCTTTAATAGGAGCAGAGAGTGGTGCAGTTGCAGAATTGAAACAACTCTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatgattctgatttactattactaatgattgaaacatgatgtacgtttggcagCTTTAATAGGAGCAGAGAGTGGTGCAGTTGCAGAATTGAAACAACTCTTCGCCTTGGCAGAGGGTTATGGTATCCAGGATTGGCTAAGGTTTGATGCCTC
                     tactaat  putative branch site (score: 1)
            atttactattactaat  TA-rich tract