1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtttggttcactgtcacgtttctgttcggcatgatgaacaagtgcagagttatggtcgctagaacacatgcttctgttgtgttttattgttgtggttgtgtttcaggaatgatcccgttctcttggatgtttctgattacacctgatttttctgtgctgttagCCCTGGGAGCTGTTTCTTTTTACCTCATGGTGCTCGGATATACAACAAATTGCAAGCTTTTATCAGGGATGAGTACCGAAAAAGAGGTTATGAGGAG
species | Physcomitrella patens |
transcript | PP1S400_36V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CATCGGAAGCTTGGCCAACAGCAAGAGCTTTTCTTCTTTCACGAATTGAG CCCTGGGAGCTGTTTCTTTTTACCTCATGGTGCTCGGATATACAACAAATTEST: gi|100385844|gb|BY951038.1|BY951038
genomic: CATCGGAAGCTTGGCCAACAGCAAGAGCTTTTCTTCTTTCACGAATTGAGgtttggttca ... gtgctgttagCCCTGGGAGCTGTTTCTTTTTACCTCATGGTGCTCGGATATACAACAAATT
EST: CATCGGAAGCTTGGCCAACAGCAAGAGCTTTTCTTCTTTCACGAATTGAG CCCTGGGAGCTGTTTCTTTTTACCTCATGGTGCTCGGATATACAACAAATTEST: gi|162185106|gb|FC362240.1|FC362240
genomic: CATCGGAAGCTTGGCCAACAGCAAGAGCTTTTCTTCTTTCACGAATTGAGgtttggttca ... gtgctgttagCCCTGGGAGCTGTTTCTTTTTACCTCATGGTGCTCGGATATACAACAAATT
EST: CATCGGAAGCTTGGCCAACAGCAAGAGCTTTTCTTCTTTCACGAATTGAG CCCTGGGAGCTGTTTCTTTTTACCTCATGGTGCTCGGATATACAACAAATT
genomic: CATCGGAAGCTTGGCCAACAGCAAGAGCTTTTCTTCTTTCACGAATTGAGgtttggttca ... gtgctgttagCCCTGGGAGCTGTTTCTTTTTACCTCATGGTGCTCGGATATACAACAAATT
atgatcccgttctcttggatgtttctgattacacctgatttttctgtgctgttagCCCTGGGAGCTGTTTCTTTTTACCTCATGGTGCTCGGATATACAACAAATTGCAAGCTTTTATCAGGGATGAGTACCGAAAAAGAGGTTATGAGGAG
tttttctgt CT-rich tract
tgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggttcactgtcacgtttctgttcggcatgatgaacaagtgcagagttatggtcgctagaacacatgcttctgttgtgttttattgttgtggttgtgtttcaggaatgatcccgttctcttggatgtttctgattacacctgatttttctgtgctgttagCCCTGGGAGCTGTTTCTTTTTACCTCATGGTGCTCGGATATACAACAAATTGCAAGCTTTTATCAGGGATGAGTACCGAAAAAGAGGTTATGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG