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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgattttttcttccttgatcaacgtttgaaatttcttgtacaaaattgttcttagcaagtgtgatatatctttgctgcaatcgacagctacagtgaccaagtgagttgaacgtgaaggaattgactcgtgctttggtatttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGTGACTCATGAAGTCCGTAGCGTGTGGGTTGCGTACTGGAGCCAGTGTGAC

Basic information

species Physcomitrella patens
transcript PP1S3_353V6.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208349639|gb|DC922029.1|DC922029
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|208400784|gb|DC925064.1|DC925064
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|208396009|gb|DC915769.1|DC915769
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|67700410|gb|BJ960643.1|BJ960643
EST:     AACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162219036|gb|FC394931.1|FC394931
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162242107|gb|FC414475.1|FC414475
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|208375064|gb|DC956432.1|DC956432
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162234770|gb|FC410595.1|FC410595
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162212517|gb|FC388493.1|FC388493
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|208381938|gb|DC923448.1|DC923448
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|18341156|gb|BJ173189.1|BJ173189
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|18337921|gb|BJ169945.1|BJ169945
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162152466|gb|FC328029.1|FC328029
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|208384341|gb|DC928092.1|DC928092
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162174027|gb|FC350542.1|FC350542
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162225092|gb|FC401716.1|FC401716
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|37848110|gb|BJ606118.1|BJ606118
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|208366354|gb|DC947564.1|DC947564
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGGGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162160439|gb|FC337440.1|FC337440
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|37826154|gb|BJ584166.1|BJ584166
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162198043|gb|FC372070.1|FC372070
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|37832850|gb|BJ590862.1|BJ590862
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|37831516|gb|BJ589528.1|BJ589528
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|67696778|gb|BJ957011.1|BJ957011
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|208352003|gb|DC925812.1|DC925812
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|37821601|gb|BJ579667.1|BJ579667
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|37851324|gb|BJ609332.1|BJ609332
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162196447|gb|FC373047.1|FC373047
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCC
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCC
EST: gi|162234771|gb|FC410596.1|FC410596
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|67576875|gb|BJ949699.1|BJ949699
EST:     ACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: ACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|208398319|gb|DC920718.1|DC920718
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162277339|gb|FC453145.1|FC453145
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162261206|gb|FC437223.1|FC437223
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|37832471|gb|BJ590483.1|BJ590483
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162196446|gb|FC373046.1|FC373046
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162198044|gb|FC372071.1|FC372071
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|67578813|gb|BJ950980.1|BJ950980
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162207902|gb|FC383608.1|FC383608
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|15320059|gb|BI487515.1|BI487515
EST:     AACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|208356230|gb|DC918428.1|DC918428
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|37853129|gb|BJ611137.1|BJ611137
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|208352941|gb|DC921811.1|DC921811
EST:     AACAATTTCCAACAACCTGGAGTCAGATTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162242106|gb|FC414474.1|FC414474
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|208386602|gb|DC952783.1|DC952783
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|37835063|gb|BJ593075.1|BJ593075
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162190689|gb|FC367575.1|FC367575
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162199210|gb|FC374630.1|FC374630
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162269380|gb|FC445248.1|FC445248
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|18333016|gb|BJ165030.1|BJ165030
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162171822|gb|FC348972.1|FC348972
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162207901|gb|FC383607.1|FC383607
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|208381682|gb|DC919724.1|DC919724
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|162225093|gb|FC401717.1|FC401717
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTTTCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
EST: gi|208352552|gb|DC918261.1|DC918261
EST:     AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAG                         GCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT
genomic: AACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 35 (downstream exon)
Score: 8

GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGGTCCTTTGATCCTGCTAGgtacgatttt ... atttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGTGACTCATGAAGTCCGTAGCGTGTGGGTTGCGTACTGGAGCCAGTGTGAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaccaagtgagttgaacgtgaaggaattgactcgtgctttggtatttctacagGCAAGACCGTTTTATTAAGCGCATCATTGAGTTGCTATCAGACCCCAGAGTGACTCATGAAGTCCGTAGCGTGTGGGTTGCGTACTGGAGCCAGTGTGAC
                          aattgac  putative branch site (score: 8)
                                            tatttct  putative PPT
                                            tatttcta  TA-rich tract