1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgtgtgtcgagacttttcatgacaagatcacgtatcatgacttttctcgtctcgtggcccacgcattaatatgttgtacccctgacttattgtaaacagGTATATGGGGGAGGAAAATCGAGAAACCCAATGAGATATTTGCGGACTGAAAAGCAGAAACTAACTCGTCATTGTGAGGTCACTGCCATACTTGTTCTGT
species | Physcomitrella patens |
transcript | PP1S395_19V6.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCTGAGGAACAAACAATAACCACG GTATATGGGGGAGGAAAATCGAGAAACCCAATGAGATATTTGCGGACTGAAEST: gi|100387138|gb|BY951537.1|BY951537
genomic: TTCTGAGGAACAAACAATAACCACGgtgagatcca ... ttgtaaacagGTATATGGGGGAGGAAAATCGAGAAACCCAATGAGATATTTGCGGACTGAA
EST: ATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAA-CAATAACCACG GTATATGGGGGAGGAAA-TCGAGAAACCCA-TGAGATATG-GCGGACTGAAEST: gi|100445528|gb|CJ975677.1|CJ975677
genomic: ATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAAACAATAACCACGgtgagatcca ... ttgtaaacagGTATATGGGGGAGGAAAATCGAGAAACCCAATGAGATATTTGCGGACTGAA
EST: ATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAAACAATAACCACG GTATATGGGGGAGGAAAATCGAGAAACCCAATGAGATATTTGCGGACTGAA
genomic: ATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAAACAATAACCACGgtgagatcca ... ttgtaaacagGTATATGGGGGAGGAAAATCGAGAAACCCAATGAGATATTTGCGGACTGAA
tctcgtctcgtggcccacgcattaatatgttgtacccctgacttattgtaaacagGTATATGGGGGAGGAAAATCGAGAAACCCAATGAGATATTTGCGGACTGAAAAGCAGAAACTAACTCGTCATTGTGAGGTCACTGCCATACTTGTTCTGT
ccctgac putative branch site (score: 25)
attaatatgttgta TA-rich tract