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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgcgtttataactttcacttcatttcttaattattcttgttccattattagttctgctgtaacgtcatctaatgtgcctactcgatgggagtgactgcagAATTCGACACCGAATGCGGGACGAGGAAATGTGTCTCCTTTGCATGACACTGATGCGGTCAACTCTACCCAACATAGGAAAGTGGCTTCGACCAG

Basic information

species Physcomitrella patens
transcript PP1S387_39V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162180333|gb|FC355338.1|FC355338
EST:     TTGCCGGAGCCGATTTTCCTCCAAGTACCGTTATTATAAACAAATCTGCG                         AATTCGACACCGAATGCGGGGCGAGGAAATGTGTCTCCTTTGCATGACACT
genomic: TTGCCGGAGCCGATTTTCCTCCAAGTACCGTTATTATAAACAAATCTGCGgtaagcagcc ... gtgactgcagAATTCGACACCGAATGCGGGACGAGGAAATGTGTCTCCTTTGCATGACACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattagttctgctgtaacgtcatctaatgtgcctactcgatgggagtgactgcagAATTCGACACCGAATGCGGGACGAGGAAATGTGTCTCCTTTGCATGACACTGATGCGGTCAACTCTACCCAACATAGGAAAGTGGCTTCGACCAG
                     atctaat  putative branch site (score: 3)
                     atctaat  TA-rich tract