1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tcgtggtatatagggacgaatttaaaagatttcgataaggtcgttatcctttgctgaccaatcgagattaacacttattccttgtctgctgttgtaccagTTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCGCAAGTTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCA
species | Physcomitrella patens |
transcript | PP1S37_122V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTATACCTGAAGACCTTACCAGAAGTGTTCTTCGTGACTCCAAATTTCAG TTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCGEST: gi|162172093|gb|FC347969.1|FC347969
genomic: TTATACCTGAAGACCTTACCAGAAGTGTTCTTCGTGACTCCAAATTTCAGgtacgtgggt ... gttgtaccagTTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCG
EST: TTATACCTGAAGACCTTACCAGAAGTGTTCTTCGTGACTCCAAATTTCAG TTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCGEST: gi|162248390|gb|FC422566.1|FC422566
genomic: TTATACCTGAAGACCTTACCAGAAGTGTTCTTCGTGACTCCAAATTTCAGgtacgtgggt ... gttgtaccagTTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCG
EST: TTATACCTGAAGACCTTACCAGAAGTGTTCTTCGTGACTCCAAATTTCAG TTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCGEST: gi|37828610|gb|BJ586622.1|BJ586622
genomic: TTATACCTGAAGACCTTACCAGAAGTGTTCTTCGTGACTCCAAATTTCAGgtacgtgggt ... gttgtaccagTTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCG
EST: CTTACCAGAAGTGTTCTTCGTGACTCCAAATTTCAG TTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCGEST: gi|162172079|gb|FC347968.1|FC347968
genomic: CTTACCAGAAGTGTTCTTCGTGACTCCAAATTTCAGgtacgtgggt ... gttgtaccagTTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCG
EST: CGTGACTCCAAATTTCAG TTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCGEST: gi|162235377|gb|FC412344.1|FC412344
genomic: CGTGACTCCAAATTTCAGgtacgtgggt ... gttgtaccagTTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCG
EST: TTATACCTGAAGACCTTACCAGAAGTGTTCTTCGTGACTCCAAATTTCAG TTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCGEST: gi|162266004|gb|FC442689.1|FC442689
genomic: TTATACCTGAAGACCTTACCAGAAGTGTTCTTCGTGACTCCAAATTTCAGgtacgtgggt ... gttgtaccagTTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCG
EST: TATACCTGAAGACC-TACCCAGAAGTGTTCTTCGTGACTCCAAATTTCAG TTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCGEST: gi|37839391|gb|BJ597399.1|BJ597399
genomic: TATACCTGAAGACCTTA-CCAGAAGTGTTCTTCGTGACTCCAAATTTCAGgtacgtgggt ... gttgtaccagTTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCG
EST: CCTTACCAGAAGTGTTCTTCGTGACTCCAAATTTCAG TTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCG
genomic: CCTTACCAGAAGTGTTCTTCGTGACTCCAAATTTCAGgtacgtgggt ... gttgtaccagTTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCG
atcctttgctgaccaatcgagattaacacttattccttgtctgctgttgtaccagTTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCGCAAGTTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCA
gattaac putative branch site (score: 3)
agattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgtggtatatagggacgaatttaaaagatttcgataaggtcgttatcctttgctgaccaatcgagattaacacttattccttgtctgctgttgtaccagTTGGCACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCGCAAGTTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT