1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...cattagtaattctaactctactagatgactgaacggggcagttggtgtctaccaagaaagttattaaaacctgtctgcctgtgttgtaacggtgatacagGTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCACATGCAGCTAGTGCCCAAGGCATCTCTG
species | Physcomitrella patens |
transcript | PP1S352_68V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAG GTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCAEST: gi|37832281|gb|BJ590293.1|BJ590293
genomic: TGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAGgtgagtgtat ... ggtgatacagGTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCA
EST: TGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAG GTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCAEST: gi|162183079|gb|FC360645.1|FC360645
genomic: TGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAGgtgagtgtat ... ggtgatacagGTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCA
EST: TTGTACCTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAG GTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCAEST: gi|162186605|gb|FC363577.1|FC363577
genomic: TTGTACCTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAGgtgagtgtat ... ggtgatacagGTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCA
EST: TTGTACCTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAG GTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCAEST: gi|162191186|gb|FC367864.1|FC367864
genomic: TTGTACCTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAGgtgagtgtat ... ggtgatacagGTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCA
EST: TTGTACCTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAG GTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCAEST: gi|162186604|gb|FC363576.1|FC363576
genomic: TTGTACCTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAGgtgagtgtat ... ggtgatacagGTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCA
EST: TTGTACCTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAG GTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCAEST: gi|208368657|gb|DC947932.1|DC947932
genomic: TTGTACCTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAGgtgagtgtat ... ggtgatacagGTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCA
EST: CTGTGGACGAGCGAATGCNAGTGCTGGACGGGGAGGGAAACAAG GTTCCGGATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCAEST: gi|67700043|gb|BJ960276.1|BJ960276
genomic: CTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAGgtgagtgtat ... ggtgatacagGTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCA
EST: TTGTACCTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAG GTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCA
genomic: TTGTACCTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAGgtgagtgtat ... ggtgatacagGTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCA
tgtctaccaagaaagttattaaaacctgtctgcctgtgttgtaacggtgatacagGTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCACATGCAGCTAGTGCCCAAGGCATCTCTG
ttgtaac putative branch site (score: 7)
aagaaagttattaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattagtaattctaactctactagatgactgaacggggcagttggtgtctaccaagaaagttattaaaacctgtctgcctgtgttgtaacggtgatacagGTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCACATGCAGCTAGTGCCCAAGGCATCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT