1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgcaagttccttttatctgtatttcagtatccttggacacgtttattttatttaagaggcatgtacttcattgttcgattgacgaacgccttttgtgcagTGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCTTAGTTTCTTATACTCCATGTTCAGTAGCTTGAATCTGGAGGTTCTTCCT
species | Physcomitrella patens |
transcript | PP1S32_143V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCTTCCCTGCACAAGGATATTCCAATGCGTTTCCTGGACTGTTCCCCTAG TGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCTEST: gi|37835410|gb|BJ593422.1|BJ593422
genomic: TCTTCCCTGCACAAGGATATTCCAATGCGTTTCCTGGACTGTTCCCCTAGgtacgcgatt ... ttttgtgcagTGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCT
EST: TCTTCCCTGCACAAGGATATTCCAATGCGTTTCCTGGACTGTTCCCCTAG TGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCTEST: gi|208355107|gb|DC922209.1|DC922209
genomic: TCTTCCCTGCACAAGGATATTCCAATGCGTTTCCTGGACTGTTCCCCTAGgtacgcgatt ... ttttgtgcagTGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCT
EST: TCTTCCCTGCACAAGGATATTCCAATGCGTTTCCTGGACTGTTCCCCTAG TGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCT
genomic: TCTTCCCTGCACAAGGATATTCCAATGCGTTTCCTGGACTGTTCCCCTAGgtacgcgatt ... ttttgtgcagTGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCT
ttttatttaagaggcatgtacttcattgttcgattgacgaacgccttttgtgcagTGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCTTAGTTTCTTATACTCCATGTTCAGTAGCTTGAATCTGGAGGTTCTTCCT
gattgac putative branch site (score: 3)
cgcctttt putative PPT
tttaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaagttccttttatctgtatttcagtatccttggacacgtttattttatttaagaggcatgtacttcattgttcgattgacgaacgccttttgtgcagTGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCTTAGTTTCTTATACTCCATGTTCAGTAGCTTGAATCTGGAGGTTCTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG