1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagttggattcaattgattttcctctggttcccatagctgtgtgtttgagtggtggataaatctgaatcggtcacaaacgtatgttgttgacagGTGATCAGCTTGCCATCGGAAAGGAGACAGGACGACGCTTGGGCATGGGAACCAACATGTACCCCTCATCATCTCTACTCGGGGCACACAAAGATGAGAG
species | Physcomitrella patens |
transcript | PP1S321_30V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACAATTCGAAGGGCTTTGAATCTGGGAGTTAGTGTGAAGATGATTACGG GTGATCAGCTTGCCATCGGAAAGGAGACAGGACGACGCTTGGGCATGGGAAEST: gi|162271317|gb|FC446695.1|FC446695
genomic: AACAATTCGAAGGGCTTTGAATCTGGGAGTTAGTGTGAAGATGATTACGGgtaagttgga ... ttgttgacagGTGATCAGCTTGCCATCGGAAAGGAGACAGGACGACGCTTGGGCATGGGAA
EST: AACAATTCGAAGGGCTTTGAATCTGGGAGTTAGTGTGAAGATGATTACGG GTGATCAGCTTGCCATCGGAAAGGAGACAGGACGACGCTTGGGCATGGGAAEST: gi|162257121|gb|FC432581.1|FC432581
genomic: AACAATTCGAAGGGCTTTGAATCTGGGAGTTAGTGTGAAGATGATTACGGgtaagttgga ... ttgttgacagGTGATCAGCTTGCCATCGGAAAGGAGACAGGACGACGCTTGGGCATGGGAA
EST: AACAATTCGAAGGGCTTTGAATCTGGGAGTTAGTGTGAAGATGATTACGG GTGATCAGCTTGCCATCGGAAAGGAGACAGGACGACGCTTGGGCATGGGAA
genomic: AACAATTCGAAGGGCTTTGAATCTGGGAGTTAGTGTGAAGATGATTACGGgtaagttgga ... ttgttgacagGTGATCAGCTTGCCATCGGAAAGGAGACAGGACGACGCTTGGGCATGGGAA
gtgtgtttgagtggtggataaatctgaatcggtcacaaacgtatgttgttgacagGTGATCAGCTTGCCATCGGAAAGGAGACAGGACGACGCTTGGGCATGGGAACCAACATGTACCCCTCATCATCTCTACTCGGGGCACACAAAGATGAGAG
ataaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttggattcaattgattttcctctggttcccatagctgtgtgtttgagtggtggataaatctgaatcggtcacaaacgtatgttgttgacagGTGATCAGCTTGCCATCGGAAAGGAGACAGGACGACGCTTGGGCATGGGAACCAACATGTACCCCTCATCATCTCTACTCGGGGCACACAAAGATGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG