1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aatgttgttgttttgaaatagaagggccaagtttcagcattgcttacacacttgctcatcttagaaaggattcatgaagtcatggcaactatttttgcagGTATGGAGAATACGCACTGGACAATGTTTGCGGAGGTTTGAGCGAGCACATGGTCAGGGCGTAACAAGTGTTTCATTTTCAAGGGATAGTACTCAAGTCC
species | Physcomitrella patens |
transcript | PP1S31_68V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCAAGGACTCTGAAATGCTTGCTTCTGGATCTCAGGACGGCAAAATCAAG GTATGGAGAATACGCACTGGACAATGTTTGCGGAGGTTTGAGCGAGCACATEST: gi|37833181|gb|BJ591193.1|BJ591193
genomic: GCAAGGACTCTGAAATGCTTGCTTCTGGATCTCAGGACGGCAAAATCAAGgttcatttct ... atttttgcagGTATGGAGAATACGCACTGGACAATGTTTGCGGAGGTTTGAGCGAGCACAT
EST: GCAAGGACTCTGAAATGCTTGCTTCTGGATCTCAGGACGGCAAAATCAAG GTATGGAGAATACGCACTGGACAATGTTTGCGGAGGTTTGAGCGAGCACATEST: gi|67726106|gb|BJ976365.1|BJ976365
genomic: GCAAGGACTCTGAAATGCTTGCTTCTGGATCTCAGGACGGCAAAATCAAGgttcatttct ... atttttgcagGTATGGAGAATACGCACTGGACAATGTTTGCGGAGGTTTGAGCGAGCACAT
EST: GCAAGGACTCTGAAATGCTTGCTTCTGGATCTCAGGACGGCAAAATCAAG GTATGGAGAATACGCACTGGACAATGTTTGCGGAGGTTTGAGCGAGCACAC
genomic: GCAAGGACTCTGAAATGCTTGCTTCTGGATCTCAGGACGGCAAAATCAAGgttcatttct ... atttttgcagGTATGGAGAATACGCACTGGACAATGTTTGCGGAGGTTTGAGCGAGCACAT
acacacttgctcatcttagaaaggattcatgaagtcatggcaactatttttgcagGTATGGAGAATACGCACTGGACAATGTTTGCGGAGGTTTGAGCGAGCACATGGTCAGGGCGTAACAAGTGTTTCATTTTCAAGGGATAGTACTCAAGTCC
tgcttac putative branch site (score: 7)
ctattttt putative PPT
aactattttt TA-rich tract