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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatccttcattattgatatgtattccagtcctgtgattgaagaaagtgactgttgctttatttcagatggttaagttctcgagttggttcaggaaaattgttcaatgcgtaagcgtgcgtgtgtgtctatctgcagCCACCCCAGTTCAGCTTTTACGATGCTGCTAAGCCAATCTTCACATCGCCTCGGTATCTTCCCCCGACATCAATTGAACAATGCATG

Basic information

species Physcomitrella patens
transcript PP1S2_204V6.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S2_204V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: EFJ25399 (Selaginella moellendorffii), 3'ss of exon 10
gtatgatccttcattattgatatgtattccagtcctgtgattgaagaaagtgactgttgctttatttcagatggttaagttctcg-agttggttcaggaaaattgttcaatgcgtaagcgtgcgtgtgtgtctatctgcagCCACCCCAGTTCAGCTTTTACGATGCTGCTAAGCCAATCTTCACATCGCCTCGGTATCTTCCCCCGACATCAATTGAACAATGCATG
                                                                         || | |   | | ||||||  |     | ||   || |   | |        |        | ||||||||||  |||||||||||||||||||| | || || ||||||||||| || || | | | || || |||   || ||  |||||| |
-------------------------------------------------------------------------gtaatgcctttggagttggaacttcgcagttaaacacttactcatacaaaaagaaaactcttttgcagCCACCAAAGTTCAGCTTTTACGATGCTTCCAATCCCATCTTCACATCTCCGCGATTTTTGCCTCCAACAAAGATGGAGAAATGCAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162153553|gb|FC330141.1|FC330141
EST:     TCGGAACCATAAAGTCTTTCTTCGATGCCAATTTAGCTCTTACTGCCCAG                         CCACCCCAGTTCAGCTTTTACGATGCTGCTAAGCCAATCTTCACATCGCCT
genomic: TCGGAACCATAAAGTCCTTCTTCGATGCCAATTTAGCTCTTACTGCCCAGgtatgatcct ... ctatctgcagCCACCCCAGTTCAGCTTTTACGATGCTGCTAAGCCAATCTTCACATCGCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttggttcaggaaaattgttcaatgcgtaagcgtgcgtgtgtgtctatctgcagCCACCCCAGTTCAGCTTTTACGATGCTGCTAAGCCAATCTTCACATCGCCTCGGTATCTTCCCCCGACATCAATTGAACAATGCATG
                                            tctatct  CT-rich tract
            aaaattgtt  TA-rich tract